Factsheet for PGSC0003DMT400009926

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005085	Potato	nucleus	94.0	94.0
Solyc09g008250.2.1	Tomato	nucleus	92.0	93.24
Bra006811.1-P	Field mustard	nucleus	40.33	36.56
CDX88631	Canola	nucleus	40.33	36.56
AT5G57620.1	Thale cress	nucleus	40.33	36.34
CDY25898	Canola	nucleus	39.0	36.11
CDY11860	Canola	nucleus	40.0	35.93
Bra020428.1-P	Field mustard	nucleus	39.67	35.84
PGSC0003DMT400012702	Potato	nucleus	39.0	35.56
PGSC0003DMT400035941	Potato	nucleus	21.33	34.97
PGSC0003DMT400000932	Potato	nucleus	33.67	34.95
PGSC0003DMT400055148	Potato	nucleus	37.67	34.24
PGSC0003DMT400048261	Potato	nucleus	40.0	32.61
PGSC0003DMT400022009	Potato	nucleus	31.67	32.42
VIT_11s0052g01490.t01	Wine grape	nucleus	39.33	32.33
PGSC0003DMT400020979	Potato	nucleus	20.33	30.65
PGSC0003DMT400022402	Potato	nucleus	31.33	28.66
PGSC0003DMT400062839	Potato	nucleus	18.67	18.24

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102605776	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0ZX57	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400003890	PGSC:PGSC0003DMG400003890	EnsemblPlants:PGSC0003DMT400009926	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF654
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002952B55	RefSeq:XP_006354368.1	SEG:seg

Description

Transcription factor DcMYB4 [Source:PGSC_GENE;Acc:PGSC0003DMG400003890]

Coordinates

chr9:+:5087875..5089659

Molecular Weight (calculated)

33624.2 Da

IEP (calculated)

7.099

GRAVY (calculated)

-0.628

Length

300 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KFGTGGNWIA LPQKAGLRRC GKSCRLRWLN YLRPNIKHGE FSDEEDRIIC SLYGNIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLMGF VSSSHKIISP LNHYQYQHQI PTNCYNNYSS QISLLQAPSL LISSNYPNNT TFPCYETNIP STIPSSTSFL SAGASTSCTS
201: GNTTSTFAGP TTPSEESYDI SNFNFHSYMY NNNGAISEGE KLISGNNGGG CYVDEQQNPL DYSSLEEIKD LISTNHVTCN SNNFLLDHEI KTEEKVMMYY

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.