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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:plastid
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P11500_001
GSMUA_Achr1P27460_001
GSMUA_Achr2P02250_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P22810_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P09160_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P26840_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P07590_001
GSMUA_Achr8P33080_001
GSMUA_Achr9P06410_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G62090.1 GSMUA_Achr2P02250_001 AT2G47700.1 21798944
AT5G62090.1 GSMUA_Achr5P27050_001 AT2G47700.1 21798944
AT5G62090.1 GSMUA_Achr8P06630_001 AT2G47700.1 21798944
AT5G62090.1 GSMUA_Achr10P... AT3G44720.1 21798944
AT5G62090.1 GSMUA_Achr3P22810_001 AT3G44720.1 21798944
AT5G62090.1 GSMUA_Achr8P07590_001 AT3G44720.1 21798944
AT5G62090.1 GSMUA_Achr8P33080_001 AT3G44720.1 21798944
AT5G62090.1 GSMUA_AchrUn_... AT3G44720.1 21798944
AT5G62090.1 GSMUA_Achr1P11500_001 AT3G58630.1 21798944
AT5G62090.1 GSMUA_Achr1P27460_001 AT3G58630.1 21798944
AT5G62090.1 GSMUA_Achr5P09160_001 AT3G58630.1 21798944
AT5G62090.1 GSMUA_Achr6P26840_001 AT3G58630.1 21798944
AT5G62090.1 GSMUA_Achr9P06410_001 AT3G58630.1 21798944
AT5G62090.1 GSMUA_Achr10P... AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr2P13200_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr3P26230_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr4P03120_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr4P28270_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr4P32230_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr5P01960_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr6P04640_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr7P08050_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr7P27540_001 AT4G08150.1 21798944
AT5G62090.1 GSMUA_Achr10P... AT5G53950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr1P07930_001 Banana nucleus 60.52 59.07
KRG88471 Soybean nucleus, plastid 29.68 53.74
GSMUA_Achr1P16220_001 Banana nucleus 47.74 52.93
GSMUA_Achr2P03310_001 Banana nucleus 51.35 49.32
Solyc03g026190.2.1 Tomato plastid 35.87 49.29
KRH38603 Soybean plastid 30.71 44.82
GSMUA_Achr7P05870_001 Banana nucleus 16.26 44.06
KRH38604 Soybean nucleus 44.65 42.82
KRH09131 Soybean nucleus, plastid 47.35 42.23
VIT_16s0100g00500.t01 Wine grape plastid 46.58 41.78
VIT_02s0025g04390.t01 Wine grape vacuole 35.35 39.88
KRH09132 Soybean plastid 45.16 39.82
CDY30691 Canola nucleus 38.45 39.31
CDY57709 Canola nucleus, plastid 24.9 39.23
CDX89417 Canola nucleus 19.48 39.22
CDX92714 Canola cytosol 26.84 39.1
CDX92713 Canola nucleus, plastid 34.45 38.86
AT5G62090.1 Thale cress nucleus 40.65 38.6
PGSC0003DMT400037024 Potato plastid 45.55 38.54
Bra019159.1-P Field mustard nucleus, plastid 33.81 38.42
CDY50201 Canola nucleus, plastid 33.81 38.42
KXG34470 Sorghum nucleus, plastid 36.13 37.94
CDY54085 Canola nucleus, plastid 34.45 37.87
AT4G25515.1 Thale cress nucleus, plastid 33.42 37.81
CDY52362 Canola nucleus 33.16 37.35
Os06t0126000-02 Rice cytosol, nucleus 39.61 37.35
Bra029289.1-P Field mustard nucleus 31.74 37.22
KXG19170 Sorghum plastid 37.29 37.0
Zm00001d035990_P002 Maize plastid 37.03 36.79
TraesCS7B01G437100.1 Wheat plastid 38.06 36.56
Zm00001d045516_P006 Maize nucleus, plastid 36.26 36.26
TraesCS7A01G520700.1 Wheat nucleus 37.42 35.94
AT4G25520.1 Thale cress plastid 34.58 35.83
Zm00001d018890_P006 Maize nucleus, plastid 34.32 35.33
HORVU7Hr1G115870.4 Barley plastid 36.39 35.03
Bra010458.1-P Field mustard nucleus, plastid 26.71 34.33
TraesCS7D01G146100.2 Wheat nucleus, plastid 37.16 34.2
TraesCS7A01G144600.3 Wheat nucleus, plastid 37.55 34.04
TraesCS7B01G047100.4 Wheat plastid 36.9 33.61
TraesCS7D01G510400.2 Wheat nucleus 37.68 33.6
Bra013897.1-P Field mustard nucleus 17.16 33.33
HORVU7Hr1G010050.2 Barley nucleus, plastid 37.29 33.03
TraesCS7D01G050000.5 Wheat nucleus, plastid 36.39 32.91
TraesCS4A01G441500.1 Wheat nucleus, plastid 36.39 32.68
HORVU7Hr1G029650.10 Barley plastid 36.52 32.38
TraesCS7A01G054900.2 Wheat nucleus, plastid 36.39 32.16
GSMUA_Achr2P20700_001 Banana plastid 29.29 26.49
GSMUA_Achr10P... Banana nucleus, plastid 29.03 25.6
GSMUA_Achr6P18610_001 Banana plastid 28.9 25.57
GSMUA_Achr3P02850_001 Banana nucleus 29.16 25.22
GSMUA_Achr5P25900_001 Banana nucleus 23.61 19.06
Protein Annotations
EnsemblPlants:GSMUA_Achr10P07530_001EnsemblPlants:GSMUA_Achr10T07530_001EnsemblPlantsGene:GSMUA_Achr10G07530_001GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:LIM-bd/SEUSSPANTHER:PTHR10378PANTHER:PTHR10378:SF12PFAM:PF01803SEG:segTMHMM:TMhelix
UniParc:UPI000295C461UniProt:M0RG79MapMan:35.1:::
Description
transcriptional corepressor SEUSS, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G07530_001]
Coordinates
chr10:+:17721878..17737722
Molecular Weight (calculated)
86826.7 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.396
Length
775 amino acids
Sequence
(BLAST)
001: MSGNDRSGLR LASGEMNQIL NSVGNSSGPS VGASSLVTDA NSGLSGGPQL QKSTSFNNDS LQEQVQKQGL STATSQLVQQ EPNNLMNAQK KPRLGVKHED
101: VLQQQLIQQL LQRHDGMHPQ VQQNPQLQTI LQQQRLMQRQ QHQQQIMQSL SQLQQGPITL QQQQQLRHHL QPQSIQSATL IKRPLDNGIC SRRLMQYLFH
201: QRHRPPDNSI LYWRKFVAEY FAVRARKRWC LSLYDNMANN TLGVFPQLAV DAWQCGFCGS KSGKGFEATF DVLPRLFQIK FDHGVIDENL FLDMPHESRL
301: SSGIMVLEYE KAVQESVYEH LHIVREGQLR IIFTPELKIL LWEFCTRRHE EFLPRRLLAP QVNQLLQVAQ KYQATVTENN TAGVSHQDLQ TSCNMFAAIG
401: RQLARNFDLQ SLNDLGFSKR YVRCLQISEV VSSMKDLIDF SQEQKIGAIE SLKNYPRHAA AKHQKQKLDE EQAMSSHALP GDPSTLKKAT GIQAGLNNYI
501: NNNLAASQAA NSSQQGVHAL NSFQNMLRNT LNLKQNVLQE EALSSLSGSN HAQPLQFQGS ASSVSIDASV SNLSGQHRPQ PPLDIRLQQQ YNPQNPQVNQ
601: HMQQHVIQQM LQEMMNNKGA SQQAVIAPNA NAGLAAGDVT GGDITGGMGS KSYSFQSAAT ASNPTISGNI INSRPDLPQN MGLPEMDHIA QEFAENGIFD
701: ADSWVMAMLF QYDVQMNLQV FSLHFLMFAT SNCLFFIVMI AVIVFLVVVS TAHRGFYILW GWKNDAFMVK HLPLN
Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)
001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS
Arabidopsis Description
SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.