Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P01960_001 | Banana | nucleus | 44.44 | 81.25 |
| GSMUA_Achr4P28270_001 | Banana | nucleus | 62.39 | 80.81 |
| GSMUA_Achr7P08050_001 | Banana | nucleus | 54.7 | 72.18 |
| CDY34012 | Canola | nucleus | 38.75 | 70.47 |
| GSMUA_Achr10P... | Banana | nucleus | 48.15 | 65.0 |
| GSMUA_Achr6P04640_001 | Banana | nucleus | 64.1 | 63.03 |
| GSMUA_Achr4P32230_001 | Banana | nucleus | 61.82 | 62.9 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 63.82 | 60.54 |
| GSMUA_Achr4P03120_001 | Banana | nucleus | 47.58 | 57.59 |
| Solyc04g077210.2.1 | Tomato | nucleus | 57.27 | 56.62 |
| PGSC0003DMT400012712 | Potato | nucleus | 57.55 | 56.11 |
| GSMUA_Achr7P27540_001 | Banana | nucleus | 55.84 | 56.0 |
| KRH15482 | Soybean | nucleus | 59.83 | 54.55 |
| GSMUA_Achr3P26230_001 | Banana | nucleus | 49.57 | 54.04 |
| KRH61471 | Soybean | nucleus | 55.56 | 54.02 |
| KRG88661 | Soybean | nucleus | 58.97 | 53.49 |
| Bra000638.1-P | Field mustard | nucleus | 57.55 | 52.2 |
| AT4G08150.1 | Thale cress | nucleus | 58.12 | 51.26 |
| CDX83145 | Canola | nucleus | 57.55 | 50.25 |
| Zm00001d033861_P001 | Maize | nucleus | 46.72 | 45.56 |
| GSMUA_Achr8P10550_001 | Banana | nucleus | 38.75 | 44.3 |
| OQU91064 | Sorghum | nucleus | 46.15 | 43.67 |
| CDY68624 | Canola | nucleus | 43.02 | 43.27 |
| GSMUA_Achr11P... | Banana | nucleus | 37.89 | 43.18 |
| GSMUA_Achr4P14600_001 | Banana | nucleus | 46.72 | 42.27 |
| Os03t0727200-00 | Rice | nucleus | 43.59 | 41.92 |
| GSMUA_Achr2P00410_001 | Banana | nucleus | 36.18 | 41.64 |
| GSMUA_Achr8P05110_001 | Banana | nucleus | 35.33 | 40.13 |
| GSMUA_Achr5P04420_001 | Banana | nucleus | 19.66 | 27.49 |
| GSMUA_Achr1P03660_001 | Banana | nucleus | 21.65 | 26.12 |
| GSMUA_Achr4P20400_001 | Banana | nucleus | 26.5 | 24.22 |
| GSMUA_Achr3P13370_001 | Banana | nucleus | 24.5 | 24.09 |
| GSMUA_Achr7P05170_001 | Banana | nucleus | 26.78 | 23.92 |
| GSMUA_Achr10P... | Banana | nucleus | 26.5 | 23.72 |
| GSMUA_Achr1P26000_001 | Banana | nucleus | 24.5 | 23.31 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr2G13200_001 | EnsemblPlants:GSMUA_Achr2P13200_001 | EnsemblPlants:GSMUA_Achr2T13200_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | UniProt:M0S7L1 |
| PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 |
| SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI0002963891 | SEG:seg | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G13200_001]
Coordinates
chr2:-:15417116..15421309
Molecular Weight (calculated)
38901.6 Da
IEP (calculated)
6.441
GRAVY (calculated)
-0.654
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFSHLGGG STSRGANFLY LPSSTTTTTS AAAQLNAAAY GRSCHPTLPY LQPPVPLKPE VGSALQPSSS QEGAVDGRGQ GEISPGDTEE IKAKIMSHPQ
101: YSTLIGAYID CQTVGAPPDV VARLSAIARE LQSRSRCRQE ASSDPELDQF MEAYCGLLVK YREELTRPLH EATDFLRRVE SQFNALTNTP SSRIFYSDEG
201: CEGVASSEEE ADASGGETDV SLIDPHADDK ELKHHLLKKY SGYLSSLRQE LSKKKKKGKL PKEARQKLLS WWALHYKWPY PSETEKVALA ESTGLDQKQI
301: NNWFINQRKR HWKPSEDMHL VVMDGFHPQN AAASLYMEGQ YMGNGVYRTG P
101: YSTLIGAYID CQTVGAPPDV VARLSAIARE LQSRSRCRQE ASSDPELDQF MEAYCGLLVK YREELTRPLH EATDFLRRVE SQFNALTNTP SSRIFYSDEG
201: CEGVASSEEE ADASGGETDV SLIDPHADDK ELKHHLLKKY SGYLSSLRQE LSKKKKKGKL PKEARQKLLS WWALHYKWPY PSETEKVALA ESTGLDQKQI
301: NNWFINQRKR HWKPSEDMHL VVMDGFHPQN AAASLYMEGQ YMGNGVYRTG P
001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
Arabidopsis Description
KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.