Factsheet for GSMUA_Achr6P19470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT3G52525.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT3G52525.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G376000.1	Wheat	plastid	54.84	45.54
HORVU3Hr1G083700.1	Barley	plastid	54.84	45.54
TraesCS3B01G408300.1	Wheat	plastid	54.3	44.69
TraesCS3D01G368500.1	Wheat	plastid	54.3	44.49
GSMUA_Achr9P02660_001	Banana	mitochondrion	47.31	44.44
Os01t0864000-01	Rice	mitochondrion, plastid	54.3	44.3
EES03931	Sorghum	plastid	53.76	42.37
GSMUA_Achr6P18350_001	Banana	mitochondrion	45.7	39.35
Zm00001d042752_P001	Maize	nucleus, plastid	51.08	38.62
Zm00001d012282_P001	Maize	nucleus, plastid	51.08	38.46
GSMUA_AchrUn_...	Banana	mitochondrion	43.01	36.04
Zm00001d038283_P001	Maize	nucleus	43.55	35.53
Os05t0440900-00	Rice	plastid	44.09	35.5
HORVU1Hr1G074020.1	Barley	nucleus, plastid	42.47	34.8
TraesCS1B01G284700.1	Wheat	plastid	41.94	34.51
TraesCS1D01G275100.1	Wheat	plastid	41.94	34.06
TraesCS1A01G275500.1	Wheat	nucleus, plastid	41.94	34.06
EES18304	Sorghum	nucleus, plastid	41.4	33.62
Solyc11g068780.1.1	Tomato	cytosol	24.19	32.85
KRH72226	Soybean	mitochondrion	30.11	32.18
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	31.72	31.72
PGSC0003DMT400050511	Potato	cytosol	23.66	31.65
KRH32810	Soybean	mitochondrion	30.11	31.64
Solyc01g007800.2.1	Tomato	mitochondrion	30.65	31.32
PGSC0003DMT400042334	Potato	mitochondrion	30.65	30.98
KRH67981	Soybean	mitochondrion	30.11	29.47
Solyc10g082050.1.1	Tomato	mitochondrion	27.42	28.65
KRG96237	Soybean	mitochondrion	29.03	28.27
AT3G52525.1	Thale cress	plastid	23.66	27.67
GSMUA_Achr5P20250_001	Banana	plastid	30.65	27.54
AT2G36026.1	Thale cress	nucleus, plastid	26.88	27.32
PGSC0003DMT400072347	Potato	mitochondrion, plastid	27.42	26.98
Bra005303.1-P	Field mustard	mitochondrion, plastid	26.88	26.88
CDX75076	Canola	nucleus	26.88	26.88
Bra017266.1-P	Field mustard	nucleus	26.34	26.34
CDY43753	Canola	nucleus	26.34	26.34
GSMUA_Achr11P...	Banana	plastid	24.19	26.16
GSMUA_Achr1P03740_001	Banana	plastid	22.58	24.14
GSMUA_Achr11P...	Banana	nucleus	19.89	23.57
KRH26670	Soybean	mitochondrion	23.12	23.12
GSMUA_Achr8P12190_001	Banana	plastid	23.12	21.94
KRH30374	Soybean	nucleus, plastid	23.12	21.83
KRH22646	Soybean	mitochondrion, nucleus	21.51	21.74
KRH25295	Soybean	nucleus, plastid	22.58	21.54
GSMUA_Achr4P14010_001	Banana	nucleus	20.97	18.14
GSMUA_Achr2P19920_001	Banana	nucleus	18.28	17.71
GSMUA_Achr1P04990_001	Banana	nucleus	24.19	15.15
GSMUA_Achr9P05500_001	Banana	nucleus	23.66	13.46
GSMUA_Achr7P25950_001	Banana	mitochondrion	23.12	13.11
GSMUA_Achr8P15960_001	Banana	nucleus	24.19	12.68
GSMUA_Achr6P31770_001	Banana	nucleus	19.89	12.63
GSMUA_Achr5P29630_001	Banana	nucleus	20.97	12.54
GSMUA_Achr6P25230_001	Banana	nucleus	19.35	12.5
GSMUA_Achr9P05640_001	Banana	nucleus	18.28	11.76
GSMUA_Achr3P09850_001	Banana	mitochondrion	19.89	11.67
GSMUA_AchrUn_...	Banana	mitochondrion	21.51	11.08

Protein Annotations

EnsemblPlants:GSMUA_Achr6P19470_001	EnsemblPlants:GSMUA_Achr6T19470_001	EnsemblPlantsGene:GSMUA_Achr6G19470_001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C
PANTHER:PTHR33057	PANTHER:PTHR33057:SF64	PFAM:PF04844	PFscan:PS51754	SEG:seg	TIGRFAMs:TIGR01568
UniParc:UPI0002956A59	UniProt:M0T8E5	MapMan:15.5.37	:	:	:

Description

Putative DUF623 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G19470_001]

Coordinates

chr6:-:13770767..13771327

Molecular Weight (calculated)

21092.9 Da

IEP (calculated)

10.081

GRAVY (calculated)

-0.680

Length

186 amino acids

Sequence
(BLAST)

001: MSFCSRRKIH VRHPVVVDIG CNCRKPRLAS LFSSFSSASK PKPKTRPADL STTTSSSATA YASTSTWDPS FTSTDASHEQ TPSPPPQPQQ RRRRRKKHGR
101: VVRESLPVVK ETSEPYSEFK ESMVQMIVEK EIYGWDDLND LLHRFLSLNS PRHHHLILRA FADLWNGVFS PPSPLAGDDY APPPFY

Best Arabidopsis Sequence Match ( AT2G36026.1 )
(BLAST)

001: MTTGKSKKKK MVLKAVSVVD IGCGNCKFPS LSSFFNPSPK KPRLYSSNYG HCHSSTPTTA SSSSAVPSTS HWFSDTSSSS ATPSAAAVAV EKDSDDPYLD
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK

Arabidopsis Description

Ovate family protein [Source:UniProtKB/TrEMBL;Acc:B3H6R4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.