Factsheet for Solyc10g082050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g077210.2.1
Solyc08g080120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	Solyc08g080120.2.1	AT1G62990.1	15781858
AT3G52525.1	Solyc04g077210.2.1	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072347	Potato	mitochondrion, plastid	93.26	87.83
Solyc01g007800.2.1	Tomato	mitochondrion	71.35	69.78
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	57.3	54.84
AT3G52525.1	Thale cress	plastid	45.51	50.94
KRH32810	Soybean	mitochondrion	50.56	50.85
KRH72226	Soybean	mitochondrion	49.44	50.57
KRH67981	Soybean	mitochondrion	53.93	50.53
KRG96237	Soybean	mitochondrion	53.93	50.26
Solyc11g068780.1.1	Tomato	cytosol	36.52	47.45
CDY43753	Canola	nucleus	48.88	46.77
Bra017266.1-P	Field mustard	nucleus	48.88	46.77
CDX75076	Canola	nucleus	48.31	46.24
Bra005303.1-P	Field mustard	mitochondrion, plastid	47.75	45.7
AT2G36026.1	Thale cress	nucleus, plastid	46.07	44.81
GSMUA_Achr9P02660_001	Banana	mitochondrion	32.02	28.79
GSMUA_Achr6P19470_001	Banana	nucleus	28.65	27.42
GSMUA_Achr5P20250_001	Banana	plastid	31.46	27.05
GSMUA_Achr6P18350_001	Banana	mitochondrion	32.58	26.85
TraesCS3A01G376000.1	Wheat	plastid	32.58	25.89
HORVU3Hr1G083700.1	Barley	plastid	32.58	25.89
GSMUA_AchrUn_...	Banana	mitochondrion	32.02	25.68
TraesCS3B01G408300.1	Wheat	plastid	32.58	25.66
TraesCS3D01G368500.1	Wheat	plastid	32.02	25.11
GSMUA_Achr11P...	Banana	plastid	24.16	25.0
Os01t0864000-01	Rice	mitochondrion, plastid	32.02	25.0
EES03931	Sorghum	plastid	32.58	24.58
TraesCS1D01G191500.1	Wheat	mitochondrion	33.71	24.39
GSMUA_Achr1P03740_001	Banana	plastid	23.6	24.14
TraesCS1B01G193300.1	Wheat	mitochondrion	33.15	23.98
TraesCS1A01G185400.1	Wheat	mitochondrion	33.15	23.98
GSMUA_Achr8P12190_001	Banana	plastid	26.4	23.98
HORVU1Hr1G049440.1	Barley	mitochondrion	33.15	23.69
Zm00001d042752_P001	Maize	nucleus, plastid	32.58	23.58
Zm00001d029718_P001	Maize	mitochondrion	34.27	23.46
Zm00001d012282_P001	Maize	nucleus, plastid	32.02	23.08
Os10t0532600-01	Rice	mitochondrion	33.15	22.43
Zm00001d038283_P001	Maize	nucleus	28.09	21.93
EES18304	Sorghum	nucleus, plastid	28.09	21.83
TraesCS1A01G275500.1	Wheat	nucleus, plastid	28.09	21.83
TraesCS1B01G284700.1	Wheat	plastid	27.53	21.68
TraesCS1D01G275100.1	Wheat	plastid	27.53	21.4
EER94592	Sorghum	mitochondrion	33.71	21.28
Os05t0440900-00	Rice	plastid	27.53	21.21
Zm00001d047346_P001	Maize	mitochondrion	32.58	21.09
HORVU1Hr1G074020.1	Barley	nucleus, plastid	26.4	20.7
Os02t0679700-01	Rice	plastid	29.21	18.51
Solyc04g080210.1.1	Tomato	mitochondrion	27.53	18.42
TraesCS4D01G316300.1	Wheat	nucleus, plastid	22.47	17.7
EER92948	Sorghum	plastid	25.28	17.65
TraesCS5A01G492400.1	Wheat	nucleus	22.47	17.17
Zm00001d027453_P001	Maize	plastid	23.6	17.0
TraesCS6D01G239400.1	Wheat	plastid	28.09	16.89
HORVU6Hr1G065900.1	Barley	mitochondrion, plastid	28.09	16.84
TraesCS6A01G258000.1	Wheat	plastid	27.53	16.78
OQU85631	Sorghum	plastid	28.65	16.56
TraesCS6B01G267100.1	Wheat	plastid	27.53	16.44
Zm00001d017606_P001	Maize	plastid	26.97	16.44
TraesCS2B01G415000.1	Wheat	mitochondrion	32.58	15.51
TraesCS2D01G394400.1	Wheat	mitochondrion	33.15	15.45
HORVU4Hr1G083150.1	Barley	plastid	21.91	15.41
TraesCS2A01G396600.1	Wheat	mitochondrion, plastid	32.58	15.3
Solyc09g018200.1.1	Tomato	nucleus	21.35	15.14
Zm00001d026061_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.02	14.88
Os04t0577700-01	Rice	nucleus	30.34	14.71
Zm00001d002594_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.02	14.36
HORVU2Hr1G094240.1	Barley	cytosol, mitochondrion, plastid	28.65	14.21
EES11304	Sorghum	plastid	32.58	14.18
TraesCS4B01G319700.1	Wheat	plastid	22.47	13.11
Solyc10g076180.1.1	Tomato	nucleus	23.6	13.08
Os03t0126450-00	Rice	nucleus	24.72	13.06
Solyc03g034100.2.1	Tomato	mitochondrion	28.65	13.04
Solyc06g082460.1.1	Tomato	nucleus	22.47	11.4
Os01t0831800-00	Rice	plastid	16.29	10.47
Solyc02g072030.1.1	Tomato	mitochondrion, nucleus, plastid	21.91	10.34
Solyc08g068170.1.1	Tomato	plastid	28.65	10.12
Solyc02g085500.2.1	Tomato	mitochondrion	12.36	7.91

Protein Annotations

EnsemblPlants:Solyc10g082050.1.1	EnsemblPlantsGene:Solyc10g082050.1	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF17	PFAM:PF04844	PFscan:PS51754	SEG:seg	TIGRFAMs:TIGR01568	UniParc:UPI0002769C13
UniProt:K4D391	MapMan:15.5.37	:	:	:	:

Description

No Description!

Coordinates

chr10:+:62944463..62944999

Molecular Weight (calculated)

19944.6 Da

IEP (calculated)

8.906

GRAVY (calculated)

-0.380

Length

178 amino acids

Sequence
(BLAST)

001: MSTTKKRVIL RNVTVKLGCS SSCIRPKFSS IFHPKPRRHH SADSAAVFNH HKTPNNKYSF SNSTITTATT FSPSPTPSPA HYSSDAERAV QGFGRIGGES
101: VAVEKDSDDP YVDFRQSMLQ MILEKEIYSK DELRELLNCF LQLNSPYYHG IIVRAFTEIW HCVFSVNPGV TGAESPFL

Best Arabidopsis Sequence Match ( AT3G52525.1 )
(BLAST)

001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY

Arabidopsis Description

OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.