Factsheet for Zm00001d017606_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007842_P002
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d027431_P002
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d048471_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	Zm00001d027431_P002	AT1G62990.1	15781858
AT3G52525.1	Zm00001d048471_P001	AT1G62990.1	15781858
AT3G52525.1	Zm00001d007842_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d013559_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d018742_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033404_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033859_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033861_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d034212_P001	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85631	Sorghum	plastid	81.51	77.27
Os02t0679700-01	Rice	plastid	54.11	56.23
TraesCS6D01G239400.1	Wheat	plastid	54.79	54.05
TraesCS6A01G258000.1	Wheat	plastid	53.77	53.77
HORVU6Hr1G065900.1	Barley	mitochondrion, plastid	54.11	53.2
TraesCS6B01G267100.1	Wheat	plastid	53.42	52.35
GSMUA_Achr1P03740_001	Banana	plastid	25.0	41.95
GSMUA_Achr11P...	Banana	plastid	23.63	40.12
Os01t0831800-00	Rice	plastid	35.62	37.55
GSMUA_Achr8P12190_001	Banana	plastid	25.0	37.24
Solyc11g068780.1.1	Tomato	cytosol	17.47	37.23
GSMUA_Achr5P20250_001	Banana	plastid	26.03	36.72
Zm00001d029718_P001	Maize	mitochondrion	32.19	36.15
Zm00001d047346_P001	Maize	mitochondrion	32.53	34.55
PGSC0003DMT400050511	Potato	cytosol	16.44	34.53
Zm00001d002594_P001	Maize	cytosol, mitochondrion, nucleus, plastid	45.55	33.5
Zm00001d027453_P001	Maize	plastid	28.08	33.2
Zm00001d026061_P001	Maize	cytosol, mitochondrion, nucleus, plastid	43.49	33.16
AT3G52525.1	Thale cress	plastid	17.12	31.45
KRH32810	Soybean	mitochondrion	18.84	31.07
KRH67981	Soybean	mitochondrion	20.21	31.05
KRH72226	Soybean	mitochondrion	17.81	29.89
KRG96237	Soybean	mitochondrion	19.52	29.84
AT2G36026.1	Thale cress	nucleus, plastid	18.49	29.51
Bra005303.1-P	Field mustard	mitochondrion, plastid	17.81	27.96
Bra017266.1-P	Field mustard	nucleus	17.81	27.96
CDX75076	Canola	nucleus	17.81	27.96
CDY43753	Canola	nucleus	17.81	27.96
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	17.81	27.96
PGSC0003DMT400042334	Potato	mitochondrion	17.47	27.72
Solyc01g007800.2.1	Tomato	mitochondrion	17.12	27.47
PGSC0003DMT400072347	Potato	mitochondrion, plastid	17.47	26.98
Solyc10g082050.1.1	Tomato	mitochondrion	16.44	26.97
KRH26670	Soybean	mitochondrion	17.12	26.88
KRH22646	Soybean	mitochondrion, nucleus	16.44	26.09
KRH30374	Soybean	nucleus, plastid	15.75	23.35
KRH25295	Soybean	nucleus, plastid	15.41	23.08
Zm00001d038283_P001	Maize	nucleus	16.44	21.05
Zm00001d042752_P001	Maize	nucleus, plastid	17.47	20.73
Zm00001d012282_P001	Maize	nucleus, plastid	16.1	19.03
Zm00001d009993_P001	Maize	nucleus, plastid	14.38	16.22
Zm00001d000458_P001	Maize	mitochondrion, plastid	15.41	15.62
Zm00001d007168_P001	Maize	mitochondrion	12.33	15.45
Zm00001d037814_P001	Maize	plastid	14.73	15.14
Zm00001d022446_P001	Maize	nucleus	12.67	15.04
Zm00001d029067_P001	Maize	mitochondrion	14.04	14.7
Zm00001d039313_P001	Maize	mitochondrion	18.49	14.32
Zm00001d038714_P001	Maize	nucleus	15.07	13.97
Zm00001d044167_P001	Maize	mitochondrion, nucleus	20.21	13.85
Zm00001d011410_P001	Maize	nucleus, plastid	18.49	13.53
Zm00001d038473_P001	Maize	mitochondrion	16.78	13.39
Zm00001d012498_P001	Maize	nucleus	16.44	13.3
Zm00001d043470_P001	Maize	mitochondrion, nucleus	15.07	13.02
Zm00001d043046_P001	Maize	peroxisome	16.1	12.77

Protein Annotations

EntrezGene:100281885	MapMan:15.5.37	ProteinID:AQK73536.1	UniProt:B4FVC0	EMBL:BT041058	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EMBL:HQ858798
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51257	PFscan:PS51754
PANTHER:PTHR33057	PANTHER:PTHR33057:SF6	TIGRFAMs:TIGR01568	UniParc:UPI00017B76F0	EnsemblPlantsGene:Zm00001d017606	EnsemblPlants:Zm00001d017606_P001
EnsemblPlants:Zm00001d017606_T001	SEG:seg	:	:	:	:

Description

OVATE-transcription factor 23Transcription repressor OFP6

Coordinates

chr5:+:201436779..201437657

Molecular Weight (calculated)

30886.1 Da

IEP (calculated)

10.323

GRAVY (calculated)

-0.532

Length

292 amino acids

Sequence
(BLAST)

001: MKSPAVPAKR RHGGNGSGSG PGFALGCGCK DAKSVSVSVS ASASPSQSAT TGTSTVTRRT SAGGLNPWAS TTTDTLTSAS ASSLWEDAVE GLGYKDGGCR
101: MVPESTAPSF SGLLRELGEL ERSVASWGGA RKGHRRDREG KLSPPALRHE QQRRAAKGEP RDSEENRFVD AGAGLQGSVA VVKQSDDPLR DFRRSMLQMI
201: VENGIVAGED LREMLRRFLT LNAPHHHDAI LRAFAEIWDD VFVAAAASLD DCASPVGRAS SVSGREPAAA GRPPAPRTTA RHHRRSPPAW RV

Best Arabidopsis Sequence Match ( AT2G36026.1 )
(BLAST)

001: MTTGKSKKKK MVLKAVSVVD IGCGNCKFPS LSSFFNPSPK KPRLYSSNYG HCHSSTPTTA SSSSAVPSTS HWFSDTSSSS ATPSAAAVAV EKDSDDPYLD
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK

Arabidopsis Description

Ovate family protein [Source:UniProtKB/TrEMBL;Acc:B3H6R4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.