Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g04630.t01 | |
| VIT_18s0001g08380.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52525.1 | VIT_02s0025g04630.t01 | AT1G62990.1 | 15781858 |
| AT3G52525.1 | VIT_18s0001g08380.t01 | AT4G08150.1 | 15781858 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g007800.2.1 | Tomato | mitochondrion | 60.22 | 61.54 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 60.75 | 61.41 |
| KRH67981 | Soybean | mitochondrion | 60.75 | 59.47 |
| KRH32810 | Soybean | mitochondrion | 56.45 | 59.32 |
| KRG96237 | Soybean | mitochondrion | 60.75 | 59.16 |
| KRH72226 | Soybean | mitochondrion | 53.76 | 57.47 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 54.84 | 57.3 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 54.3 | 53.44 |
| AT3G52525.1 | Thale cress | plastid | 40.86 | 47.8 |
| CDY43753 | Canola | nucleus | 44.62 | 44.62 |
| CDX75076 | Canola | nucleus | 44.62 | 44.62 |
| Bra017266.1-P | Field mustard | nucleus | 44.62 | 44.62 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 44.09 | 44.09 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 41.94 | 42.62 |
| GSMUA_Achr9P02660_001 | Banana | mitochondrion | 36.02 | 33.84 |
| GSMUA_Achr6P19470_001 | Banana | nucleus | 31.72 | 31.72 |
| GSMUA_Achr6P18350_001 | Banana | mitochondrion | 36.02 | 31.02 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 33.87 | 28.38 |
| HORVU3Hr1G083700.1 | Barley | plastid | 32.26 | 26.79 |
| TraesCS3A01G376000.1 | Wheat | plastid | 32.26 | 26.79 |
| EES03931 | Sorghum | plastid | 33.87 | 26.69 |
| TraesCS3B01G408300.1 | Wheat | plastid | 32.26 | 26.55 |
| Os01t0864000-01 | Rice | mitochondrion, plastid | 32.26 | 26.32 |
| TraesCS3D01G368500.1 | Wheat | plastid | 31.72 | 25.99 |
| TraesCS1D01G191500.1 | Wheat | mitochondrion | 33.87 | 25.61 |
| Zm00001d042752_P001 | Maize | nucleus, plastid | 33.87 | 25.61 |
| TraesCS1B01G193300.1 | Wheat | mitochondrion | 33.33 | 25.2 |
| TraesCS1A01G185400.1 | Wheat | mitochondrion | 33.33 | 25.2 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 27.96 | 25.12 |
| GSMUA_Achr11P... | Banana | plastid | 23.12 | 25.0 |
| HORVU1Hr1G049440.1 | Barley | mitochondrion | 33.33 | 24.9 |
| Zm00001d012282_P001 | Maize | nucleus, plastid | 32.8 | 24.7 |
| Zm00001d029718_P001 | Maize | mitochondrion | 33.33 | 23.85 |
| Zm00001d038283_P001 | Maize | nucleus | 29.03 | 23.68 |
| TraesCS1A01G275500.1 | Wheat | nucleus, plastid | 29.03 | 23.58 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 22.04 | 23.56 |
| TraesCS1B01G284700.1 | Wheat | plastid | 28.49 | 23.45 |
| Os10t0532600-01 | Rice | mitochondrion | 32.8 | 23.19 |
| EES18304 | Sorghum | nucleus, plastid | 28.49 | 23.14 |
| TraesCS1D01G275100.1 | Wheat | plastid | 28.49 | 23.14 |
| HORVU1Hr1G074020.1 | Barley | nucleus, plastid | 27.96 | 22.91 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 23.66 | 22.45 |
| EER94592 | Sorghum | mitochondrion | 33.33 | 21.99 |
| Zm00001d047346_P001 | Maize | mitochondrion | 32.26 | 21.82 |
| Os02t0679700-01 | Rice | plastid | 31.72 | 21.0 |
| Os05t0440900-00 | Rice | plastid | 25.27 | 20.35 |
| OQU85631 | Sorghum | plastid | 31.72 | 19.16 |
| VIT_04s0023g01490.t01 | Wine grape | mitochondrion | 30.65 | 19.13 |
| TraesCS6D01G239400.1 | Wheat | plastid | 30.11 | 18.92 |
| TraesCS4D01G316300.1 | Wheat | nucleus, plastid | 22.58 | 18.58 |
| HORVU6Hr1G065900.1 | Barley | mitochondrion, plastid | 29.57 | 18.52 |
| VIT_10s0003g01750.t01 | Wine grape | nucleus | 19.35 | 18.46 |
| TraesCS6B01G267100.1 | Wheat | plastid | 29.57 | 18.46 |
| TraesCS6A01G258000.1 | Wheat | plastid | 28.49 | 18.15 |
| Zm00001d017606_P001 | Maize | plastid | 27.96 | 17.81 |
| EER92948 | Sorghum | plastid | 24.19 | 17.65 |
| TraesCS5A01G492400.1 | Wheat | nucleus | 22.04 | 17.6 |
| Zm00001d027453_P001 | Maize | plastid | 22.58 | 17.0 |
| Os04t0577700-01 | Rice | nucleus | 32.8 | 16.62 |
| HORVU4Hr1G083150.1 | Barley | plastid | 21.51 | 15.81 |
| VIT_18s0001g12310.t01 | Wine grape | mitochondrion | 30.65 | 15.62 |
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 31.18 | 15.51 |
| TraesCS2D01G394400.1 | Wheat | mitochondrion | 31.72 | 15.45 |
| Zm00001d002594_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 32.8 | 15.37 |
| TraesCS2A01G396600.1 | Wheat | mitochondrion, plastid | 31.18 | 15.3 |
| Zm00001d026061_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 30.65 | 14.88 |
| EES11304 | Sorghum | plastid | 32.26 | 14.67 |
| HORVU2Hr1G094240.1 | Barley | cytosol, mitochondrion, plastid | 26.88 | 13.93 |
| TraesCS4B01G319700.1 | Wheat | plastid | 22.04 | 13.44 |
| Os03t0126450-00 | Rice | nucleus | 23.66 | 13.06 |
| Os01t0831800-00 | Rice | plastid | 17.74 | 11.91 |
| VIT_06s0004g07910.t01 | Wine grape | nucleus | 28.49 | 11.91 |
| VIT_08s0058g01110.t01 | Wine grape | nucleus | 25.81 | 11.4 |
Protein Annotations
| EntrezGene:104880159 | MapMan:15.5.37 | ProteinID:CCB55479 | ProteinID:CCB55479.1 | UniProt:F6HKQ7 | EMBL:FN595991 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045892 |
| InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PFAM:PF04844 | PFscan:PS51754 | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF17 | TIGRFAMs:TIGR01568 | UniParc:UPI0001983EF2 | ArrayExpress:VIT_08s0007g02550 | EnsemblPlantsGene:VIT_08s0007g02550 | EnsemblPlants:VIT_08s0007g02550.t01 |
| RefSeq:XP_010654132.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:16652270..16652833
Molecular Weight (calculated)
21180.9 Da
IEP (calculated)
9.587
GRAVY (calculated)
-0.832
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTNRRKLRL NTVTVNLGCR CRRPKLSDIF NPKPKAKTTP VCRRPDTYRS SSSSWEKGGC STDQDDTTTT FSPNVGTSSD YSETDYEAKS SKKVRGFGRI
101: GGESMAVEKD SDDPYLDFRH SMLQMILEKE IYSKDDLREL LNCFLQLNSP YYHGVIVRAF TEIWNGVFSV RSASPKPHGS RKSRDF
101: GGESMAVEKD SDDPYLDFRH SMLQMILEKE IYSKDDLREL LNCFLQLNSP YYHGVIVRAF TEIWNGVFSV RSASPKPHGS RKSRDF
001: MTTGKSKKKK MVLKAVSVVD IGCGNCKFPS LSSFFNPSPK KPRLYSSNYG HCHSSTPTTA SSSSAVPSTS HWFSDTSSSS ATPSAAAVAV EKDSDDPYLD
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
Arabidopsis Description
Ovate family protein [Source:UniProtKB/TrEMBL;Acc:B3H6R4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.