Factsheet for VIT_18s0001g12310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024464.1-P	Field mustard	cytosol	12.33	51.72
VIT_04s0023g01490.t01	Wine grape	mitochondrion	37.81	46.31
KRH61189	Soybean	mitochondrion	27.67	39.0
KRH50362	Soybean	cytosol	13.15	38.4
KRH51868	Soybean	mitochondrion	26.3	38.1
PGSC0003DMT400033048	Potato	mitochondrion, nucleus, plastid	36.16	37.71
CDY29238	Canola	nucleus, plastid	29.04	34.98
AT2G18500.1	Thale cress	mitochondrion, plastid	30.14	34.92
CDY36485	Canola	nucleus	29.59	34.62
CDY43893	Canola	nucleus	29.86	34.6
Bra039604.1-P	Field mustard	nucleus	29.86	34.6
CDY59540	Canola	plastid	27.12	34.26
Solyc04g080210.1.1	Tomato	mitochondrion	24.93	34.21
Solyc02g085500.2.1	Tomato	mitochondrion	26.03	34.17
CDY72229	Canola	nucleus	29.32	34.08
PGSC0003DMT400095058	Potato	plastid	21.37	32.91
Solyc03g034100.2.1	Tomato	mitochondrion	33.97	31.71
GSMUA_Achr4P14010_001	Banana	nucleus	18.36	31.16
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	15.62	30.65
PGSC0003DMT400045857	Potato	mitochondrion	32.33	29.72
GSMUA_Achr7P25950_001	Banana	mitochondrion	24.11	26.83
TraesCS4B01G262000.1	Wheat	mitochondrion	17.53	23.19
TraesCS4D01G262000.1	Wheat	mitochondrion	17.53	23.02
TraesCS4A01G041100.1	Wheat	mitochondrion	17.26	22.42
Zm00001d000458_P001	Maize	mitochondrion, plastid	16.99	21.53
Os03t0197900-01	Rice	mitochondrion, plastid	16.16	21.45
VIT_10s0003g01750.t01	Wine grape	nucleus	11.23	21.03
EER92692	Sorghum	mitochondrion	17.26	20.19
HORVU4Hr1G070860.1	Barley	cytosol, mitochondrion	17.53	19.05
VIT_06s0004g07910.t01	Wine grape	nucleus	17.26	14.16
VIT_08s0058g01110.t01	Wine grape	nucleus	15.34	13.3

Protein Annotations

EntrezGene:100252240	wikigene:100252240	MapMan:15.5.37	ProteinID:CCB45937	ProteinID:CCB45937.1	UniProt:F6H1H8
EMBL:FN595227	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045892	InterPro:IPR006458	EntrezGene:LOC100252240	wikigene:LOC100252240	InterPro:Ovate	InterPro:Ovate_C
PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF68	TIGRFAMs:TIGR01568	UniParc:UPI0001985314
ArrayExpress:VIT_18s0001g12310	EnsemblPlantsGene:VIT_18s0001g12310	EnsemblPlants:VIT_18s0001g12310.t01	RefSeq:XP_002281515	RefSeq:XP_002281515.1	RefSeq:XP_002281515.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:10516738..10517835

Molecular Weight (calculated)

41081.6 Da

IEP (calculated)

10.287

GRAVY (calculated)

-0.839

Length

365 amino acids

Sequence
(BLAST)

001: MGKGFKLRFS LIHSLQFCRS RNRSALPESP VPASHRLSTV NRKGLDIAFP SVPDPPPSTP WHPFRRRRVK TVPMGCGCRR GSGVRSETSY DCDTESVEYS
101: WKKDGKWHVI SRVYEDGPRR KICYSPFPGE SDGDLSPNQP QKMAKEKKVR KKKKKGTVPS VRTSTSSGDS GWFSSEGGDY DEETETLLSS SRSFSNDSSF
201: EFNHPLETIS EESKSVVGKR DRMNNSKKAR RLKRHISKNC RTGSSSSSSS GSGNPKTTSS PEAESPARVS VYQGRIPCRL DGKVRESFAV VKKSKDPYED
301: FKKSMVEMIM EKQMFETKDL EQLLQCFLSL NSPQHHGIIV EAFSVVWEGL FCKSPPMARR VSRCL

Best Arabidopsis Sequence Match ( AT5G19650.1 )
(BLAST)

001: MEKRMKLRVS RIVRSSLSSC RPRDLYDVVE TCAVTSKATS SERFFVTKAK TKTPSRPKSH ASSCPRASPI FPPNPFYEES RSFRDLRKKV KTNRKQRSQF
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P

Arabidopsis Description

OFP8Transcription repressor OFP8 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9B4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.