Factsheet for VIT_10s0003g01750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11062	Soybean	plastid	51.79	27.3
KRH21207	Soybean	plastid	52.31	24.64
KRH59028	Soybean	plastid	51.28	24.45
KRH42918	Soybean	plastid	50.26	23.73
GSMUA_Achr9P05640_001	Banana	nucleus	33.33	22.49
GSMUA_Achr6P31770_001	Banana	nucleus	32.31	21.5
CDX99420	Canola	mitochondrion	32.82	19.57
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	18.46	19.35
CDY09258	Canola	mitochondrion	31.28	19.06
HORVU3Hr1G071640.1	Barley	nucleus	27.69	18.69
CDY01560	Canola	nucleus	33.85	18.54
CDX78899	Canola	mitochondrion	30.77	18.4
Bra013354.1-P	Field mustard	mitochondrion	30.77	18.4
Bra020989.1-P	Field mustard	mitochondrion	29.74	18.07
TraesCS3B01G324100.1	Wheat	nucleus	26.67	17.87
TraesCS3D01G289200.1	Wheat	nucleus	26.67	17.57
TraesCS3A01G289400.1	Wheat	nucleus	26.67	17.57
Solyc02g072030.1.1	Tomato	mitochondrion, nucleus, plastid	33.85	17.51
AT4G18830.1	Thale cress	mitochondrion, nucleus, plastid	31.28	17.48
Bra012575.1-P	Field mustard	nucleus	32.82	17.3
Os05t0517100-00	Rice	mitochondrion	26.15	16.14
PGSC0003DMT400073252	Potato	nucleus	33.85	16.1
Zm00001d038714_P001	Maize	nucleus	25.64	15.87
Zm00001d043470_P001	Maize	mitochondrion, nucleus	25.64	14.79
EES01480	Sorghum	nucleus	26.67	14.69
EES19813	Sorghum	nucleus	25.13	14.63
TraesCS1B01G350500.1	Wheat	cytosol, mitochondrion, nucleus	25.64	14.49
TraesCS1D01G340300.1	Wheat	nucleus	25.64	14.49
TraesCS1A01G338100.1	Wheat	cytosol	25.13	14.29
HORVU1Hr1G076490.1	Barley	nucleus	25.64	14.08
VIT_08s0058g01110.t01	Wine grape	nucleus	29.74	13.78
VIT_06s0004g07910.t01	Wine grape	nucleus	29.23	12.81
VIT_04s0023g01490.t01	Wine grape	mitochondrion	18.97	12.42
VIT_18s0001g12310.t01	Wine grape	mitochondrion	21.03	11.23
CDY62560	Canola	nucleus	26.67	11.02

Protein Annotations

EntrezGene:100243022	wikigene:100243022	MapMan:15.5.37	ProteinID:CBI30728	ProteinID:CBI30728.3	UniProt:D7TJQ6
EMBL:FN595992	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045892	InterPro:IPR006458	EntrezGene:LOC100243022	wikigene:LOC100243022	InterPro:Ovate	InterPro:Ovate_C
PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF10	TIGRFAMs:TIGR01568	UniParc:UPI0001BE3842
ArrayExpress:VIT_10s0003g01750	EnsemblPlantsGene:VIT_10s0003g01750	EnsemblPlants:VIT_10s0003g01750.t01	RefSeq:XP_002265116	RefSeq:XP_002265116.1	SEG:seg

Description

No Description!

Coordinates

chr10:+:3218915..3219676

Molecular Weight (calculated)

22972.8 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.760

Length

195 amino acids

Sequence
(BLAST)

001: MNLRSSILGT IEEDCTFASL NLEEPDAPSK EEKRKLKEMD IKELMSKSEN QRKSIHLSRE LQSRTKQRSK IRVHSPRTPS KVEICKIKAL EDMKAKMKMK
101: KKIEERILEG RTQIESFAVV KSSLDPQKDF RDSMIEMIME KGISQPEELE ELLACYLTLN SDEYHDLIIK VFRQVWFGLN RAYFDPELQN EHCYE

Best Arabidopsis Sequence Match ( AT4G18830.1 )
(BLAST)

001: MMRWGRKKPV SSSSSSGLSR ALPVSWFSKL SGSSDLKPAK EKKQDEKASQ NISVKTSLSS TTRRSDIHEN SKRFQRVSVE KENSATRSAD KESNEKFEEI
101: MSSVRKKVRD FQKETCGFLE VEAMDRDNGT VILTPRIQVN RDKQRCERRD QRLLEQKPKR SEQDAGVKVK KPARRTGTGG YSREDSVILG HTITKPAHQW
201: EKLKEVKLRE VKLKADQQRK SLYLKRELNR IGTKENNKVR VFSPRASEKC RVKAIEDLKK AKQRAREHEL LIETADGGME NESFAVVKCS SDPQKDFRDS
301: MIEMIMENGI NHPEELKELL VCYLRLNTDE YHDMIISVFQ QVHNDFNFH

Arabidopsis Description

OFP5Transcription repressor OFP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZN1]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.