Factsheet for VIT_08s0058g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00468	Soybean	nucleus	49.17	56.4
KRH40761	Soybean	nucleus	50.12	54.66
Solyc09g018200.1.1	Tomato	nucleus	30.17	50.6
Solyc10g076180.1.1	Tomato	nucleus	36.82	48.29
PGSC0003DMT400011286	Potato	nucleus	32.3	47.89
VIT_06s0004g07910.t01	Wine grape	nucleus	49.17	46.52
VIT_10s0003g01750.t01	Wine grape	nucleus	13.78	29.74
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	11.4	25.81
VIT_04s0023g01490.t01	Wine grape	mitochondrion	15.2	21.48
VIT_18s0001g12310.t01	Wine grape	mitochondrion	13.3	15.34

Protein Annotations

EntrezGene:100255128	wikigene:100255128	MapMan:15.5.37	ProteinID:CCB44779	ProteinID:CCB44779.1	InterPro:DNA_bnd_dom_ovate
UniProt:F6GXX8	EMBL:FN594967	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	EntrezGene:LOC100255128	wikigene:LOC100255128	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844
PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF22	TIGR:TC68587	TIGRFAMs:TIGR01568
UniParc:UPI000210A037	ArrayExpress:VIT_08s0058g01110	EnsemblPlantsGene:VIT_08s0058g01110	EnsemblPlants:VIT_08s0058g01110.t01	unigene:Vvi.11159	unigene:Vvi.25069
RefSeq:XP_002270134	RefSeq:XP_002270134.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:10497749..10502987

Molecular Weight (calculated)

47662.2 Da

IEP (calculated)

10.227

GRAVY (calculated)

-0.794

Length

421 amino acids

Sequence
(BLAST)

001: MGNYKFRLSD MMPNAWFYKL KDMGRGRGHN SGHSIKKKQS TKTAAAQAGK PKQPHRDCPR KSYYFTRDPI SSDGFFHSPT NPKVSDTNFP DPPRRSSKQR
101: VRRRALRSSP RLVTSSVSAG CSCRATLESV WTKSDSTPDF WDSPLDSSPD GVSLLPELGS DRIQSAESFD GMVSWASSCS CRVDSTANDF VIDVEEKSFS
201: RKFDKLDGFE TISELDLPPI ITKPAKFNEM VNDIKKKEMT EPVKVRRSSA KFEERNAHGS LSVKIVKEES IGMKKQKPSP VRRFSGNSPG VRLRNNSPRI
301: ASRKIQSHGR KSVSSTSSSS SRRSLSDSFA IVKSSFDPQR DFRDSMMEMI VENNIRASKD LEELLACYLS LNSDEYHDII IKVFKQIWFD IPDVHNKHHN
401: YKFGNAPVQR TYVLAQKYEG D

Best Arabidopsis Sequence Match ( AT2G30400.1 )
(BLAST)

001: MGNYKFRISE MLPNAWFHKL KDVTKHSKPK NKASSSSSNT CSKKKPSSDS LPQHSYFSNS LVANNPPHHN SPRNSLHTKK MSKRKTLYKP SLKPLTPPPL
101: LVSASFNKSK INDQDSSYSL FPAIETSPES FVYSFYEEDD DDEFVEFSNF KINTKNKAFT KQKVKVIDSV EKACTASKPI KKPQKSHLSV KISRDEDDNE
201: YKAEKKYQRQ VSSGRKPSAG INLKRVNSPR IQLSGTRRST SRRSESKQDV LESFAVMKRS VDPKKDFRES MIEMIEENNI RASKDLEDLL ACYLTLNPKE
301: YHDLIIHVFE QIWLQLTKTK

Arabidopsis Description

OFP2Transcription repressor OFP2 [Source:UniProtKB/Swiss-Prot;Acc:O04351]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.