Factsheet for VIT_06s0004g07910.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00200.t01
VIT_02s0025g04630.t01
VIT_04s0008g00880.t01
VIT_04s0008g06130.t01
VIT_06s0004g07910.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01840.1	VIT_02s0025g04630.t01	AT1G62990.1	15781858
AT5G01840.1	VIT_18s0001g08380.t01	AT4G08150.1	15781858
AT5G01840.1	VIT_04s0008g06130.t01	AT4G32040.1	15781858
AT5G01840.1	VIT_04s0008g00880.t01	AT4G32980.1	15781858
AT5G01840.1	VIT_06s0004g07910.t01	AT5G01840.1	15781858
AT5G01840.1	VIT_02s0025g00200.t01	AT5G41410.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g01110.t01	Wine grape	nucleus	46.52	49.17
Bra040948.1-P	Field mustard	nucleus	24.72	41.83
CDY04827	Canola	nucleus	24.04	41.63
AT5G01840.1	Thale cress	nucleus	24.94	41.11
VIT_10s0003g01750.t01	Wine grape	nucleus	12.81	29.23
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	11.91	28.49
VIT_04s0023g01490.t01	Wine grape	mitochondrion	15.06	22.48
VIT_18s0001g12310.t01	Wine grape	mitochondrion	14.16	17.26

Protein Annotations

EntrezGene:100248417	wikigene:100248417	MapMan:15.5.37	ProteinID:CCB43408	ProteinID:CCB43408.1	InterPro:DNA_bnd_dom_ovate
UniProt:F6GUC1	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	EntrezGene:LOC100248417	wikigene:LOC100248417	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844
PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF38	TIGRFAMs:TIGR01568	UniParc:UPI000210A8D9
ArrayExpress:VIT_06s0004g07910	EnsemblPlantsGene:VIT_06s0004g07910	EnsemblPlants:VIT_06s0004g07910.t01	RefSeq:XP_002276629	RefSeq:XP_002276629.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:8662313..8664302

Molecular Weight (calculated)

50326.6 Da

IEP (calculated)

9.773

GRAVY (calculated)

-0.570

Length

445 amino acids

Sequence
(BLAST)

001: MGNYRFRLSD MMPNAWFYKL KDMSRARNHN TAQSIKKKLP SPAATSQKTN LSQPRYSYYY NEEPIRADML YGSPVNPKAS DTHFPDPPRK SSKRRPKRKT
101: IYKPSPTLVS SVSAGYGCPA AFESVWTEHD PTESEDCFVS AIEPGHNVSL LPEVGPNTDV ASDTFNGLAP LSTSCSCRVC SSTTDIFIDV SKKSFSSKVE
201: KLDEFDTVSE LELPQVSTKP ARFRETTVEA ARHRRSSSQL EEIKAQRSLS IKIVKEGSKQ TQKEPKANPL VRKPTANAAG VKLRTNSPRL ASRKIQAYAR
301: KSVYSRTSSK AQSRSLSESC AVVKASFDPE RDFRDSMLEM IVENNIRASK DLEELLACYL SLNSDEYHDL IVKAFEQIWF DTSDLRMIIH KNKNLNTGHV
401: IRVSFWLHTN SVISTPSVPL LFSFYYFTRV NKMLVSNEWY IGVGY

Best Arabidopsis Sequence Match ( AT1G06920.1 )
(BLAST)

001: MRNYKLRLSV MSPSEWFHKL KNMTKPRKKH SLPLYSINTT KKRKPSSESK SLPYSSTSYF FNRSRSRTSF ESRILQISPR NSLHNIQSKR KTVYKPSPPS
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK

Arabidopsis Description

OFP4Transcription repressor OFP4 [Source:UniProtKB/Swiss-Prot;Acc:F4HNU8]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.