Factsheet for VIT_02s0025g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04630.t01
VIT_04s0008g06130.t01
VIT_06s0004g07910.t01
VIT_10s0003g01750.t01
VIT_10s0116g00190.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41410.1	VIT_10s0116g00190.t01	AT1G62360.1	11701881
AT5G41410.1	VIT_10s0116g00190.t01	AT1G62360.1	15781858
AT5G41410.1	VIT_10s0116g00190.t01	AT1G62360.1	17873098
AT5G41410.1	VIT_02s0025g04630.t01	AT1G62990.1	11701881
AT5G41410.1	VIT_18s0001g08380.t01	AT4G08150.1	11701881
AT5G41410.1	VIT_18s0001g08380.t01	AT4G08150.1	15781858
AT5G41410.1	VIT_18s0001g08380.t01	AT4G08150.1	17873098
AT5G41410.1	VIT_10s0003g01750.t01	AT4G18830.1	15781858
AT5G41410.1	VIT_04s0008g06130.t01	AT4G32040.1	11701881
AT5G41410.1	VIT_04s0008g06130.t01	AT4G32040.1	17873098
AT5G41410.1	VIT_06s0004g07910.t01	AT5G01840.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27902	Soybean	nucleus	66.72	67.13
KRH59951	Soybean	nucleus	65.94	67.09
KRH77572	Soybean	nucleus	66.87	66.87
KRH41225	Soybean	nucleus	66.1	66.1
PGSC0003DMT400032122	Potato	nucleus	59.91	61.14
CDY45383	Canola	nucleus	24.46	60.08
Solyc08g081400.2.1	Tomato	nucleus	59.29	59.47
GSMUA_Achr1P03680_001	Banana	nucleus	26.47	57.77
GSMUA_Achr2P04310_001	Banana	nucleus	46.75	54.12
GSMUA_Achr1P06400_001	Banana	nucleus	43.03	53.88
GSMUA_Achr4P04480_001	Banana	nucleus	33.75	51.78
GSMUA_Achr9P18740_001	Banana	nucleus	44.43	49.83
AT5G41410.1	Thale cress	nucleus	46.59	49.26
CDY44476	Canola	nucleus	42.41	48.24
Bra025497.1-P	Field mustard	nucleus	43.96	47.89
TraesCS7A01G022600.1	Wheat	nucleus	32.97	44.1
TraesCS7D01G019800.1	Wheat	nucleus	32.35	43.27
Zm00001d035907_P001	Maize	nucleus	33.13	42.97
GSMUA_Achr4P12180_001	Banana	nucleus	34.52	42.64
EER89055	Sorghum	nucleus	34.52	42.56
TraesCS4A01G469900.1	Wheat	nucleus	32.66	42.54
VIT_18s0001g11800.t01	Wine grape	nucleus	22.91	42.41
Os06t0108900-02	Rice	nucleus	34.67	42.26
Os03t0124000-01	Rice	nucleus	38.54	42.13
TraesCS1D01G193800.1	Wheat	nucleus	37.77	41.43
Os10t0534900-01	Rice	nucleus	37.46	41.3
TraesCS1B01G191800.1	Wheat	nucleus	37.15	41.03
TraesCS1A01G183400.1	Wheat	nucleus	37.15	40.96
KXG40303	Sorghum	nucleus	39.63	40.89
Zm00001d027435_P001	Maize	nucleus	38.7	40.32
HORVU1Hr1G049760.1	Barley	nucleus	37.0	40.1
TraesCS4B01G345600.1	Wheat	nucleus	37.93	40.1
TraesCS5A01G514700.1	Wheat	nucleus	37.31	39.83
TraesCS4D01G340700.1	Wheat	nucleus	37.62	39.64
HORVU4Hr1G084590.2	Barley	nucleus	36.38	37.78
EER92018	Sorghum	nucleus	34.98	35.65
Zm00001d029736_P001	Maize	nucleus, plastid	35.29	33.14
VIT_13s0019g02450.t01	Wine grape	nucleus	23.53	30.52
VIT_08s0007g01290.t01	Wine grape	nucleus	28.95	29.13
VIT_03s0038g00050.t01	Wine grape	nucleus	30.96	28.94
VIT_18s0001g13130.t01	Wine grape	nucleus	21.05	28.94
VIT_08s0105g00230.t01	Wine grape	nucleus	27.55	28.53
VIT_04s0023g01020.t01	Wine grape	nucleus	36.53	27.9
VIT_06s0009g00410.t01	Wine grape	nucleus	30.8	27.34
VIT_18s0001g13150.t01	Wine grape	nucleus	26.47	24.5
VIT_06s0004g02580.t01	Wine grape	nucleus	26.93	23.2
VIT_04s0008g00880.t01	Wine grape	nucleus	19.66	21.56

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ProteinID:CCB58192	ProteinID:CCB58192.1	ncoils:Coil	UniProt:F6HUM6
EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF66	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	TIGR:TC54313	TIGR:TC55671	UniParc:UPI00021085D8	ArrayExpress:VIT_02s0025g00200	EnsemblPlantsGene:VIT_02s0025g00200
EnsemblPlants:VIT_02s0025g00200.t01	unigene:Vvi.1354	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:331139..334518

Molecular Weight (calculated)

71879.0 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.721

Length

646 amino acids

Sequence
(BLAST)

001: MAGENPAEKS RNMVSSAGFV YSDVSSTNPS IQTQTHLVNQ IQSFESNPEM FNLTTGMEMI GFPPKNLQQP SDANSVMWKA FFGKHGNHSG PSSSKTVNES
101: TSDYYQHEFN KSDFATGISQ TTSENLMVAP DSAAWQENRL MVDDSSLRCV FPCEGNERPS QGLSLSLSSS NPSSIGLQSF ELRHTHHQEQ QMMQDGFLGK
201: AANLNQGNFQ LRNSKYLGPA QQLLNECCNL GTKQIDPPRQ KAPKTNQWED ENGSSSSCSR KPSLYSLELM ELQKRKSKLL SMLEEVDRRY KHYCDQMKAV
301: VSSFEAVAGN GAARVYSALA SKAMSRHFRC LRDGIVGQIQ ATKKAMGEKD PVAPGTTRGE TPRLRVLDQA LRQQRAFQQM SMMESHPWRP QRGLPERSVS
401: VLRAWLFEHF LHPYPSDVDK HILARQTGLS RSQVSNWFIN ARVRLWKPMV EEMYLEETKE QDNLGSPDGA TDPDDNGRPN PNPQPRIEDQ KPTAEQLVRI
501: DSECLSSIIN NPEKNDSKNG KSLQNPHPHH LHHHQPNFGR VAEAFGAVEL DFSSYNHHTA GAVSFTNDSA HHNFGGSGVS LTLGLQQHGG SGVSLAFSPA
601: SQSSLFYSRD PIEDCQPVQY SLLDGEGQNL PYRNLMGAQL LHDLAG

Best Arabidopsis Sequence Match ( AT5G41410.1 )
(BLAST)

001: MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH YNHQIFGSNS NMGMMIDFSK QQQIRMTSGS DHHHHHHQTS GGTDQNQLLE DSSSAMRLCN
101: VNNDFPSEVN DERPPQRPSQ GLSLSLSSSN PTSISLQSFE LRPQQQQQQG YSGNKSTQHQ NLQHTQMMMM MMNSHHQNNN NNNHQHHNHH QFQIGSSKYL
201: SPAQELLSEF CSLGVKESDE EVMMMKHKKK QKGKQQEEWD TSHHSNNDQH DQSATTSSKK HVPPLHSLEF MELQKRKAKL LSMLEELKRR YGHYREQMRV
301: AAAAFEAAVG LGGAEIYTAL ASRAMSRHFR CLKDGLVGQI QATSQALGER EEDNRAVSIA ARGETPRLRL LDQALRQQKS YRQMTLVDAH PWRPQRGLPE
401: RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMIEEMYCE ETRSEQMEIT NPMMIDTKPD PDQLIRVEPE SLSSIVTNPT
501: SKSGHNSTHG TMSLGSTFDF SLYGNQAVTY AGEGGPRGDV SLTLGLQRND GNGGVSLALS PVTAQGGQLF YGRDHIEEGP VQYSASMLDD DQVQNLPYRN
601: LMGAQLLHDI V

Arabidopsis Description

BEL1Homeobox protein BEL1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q38897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.