Factsheet for VIT_04s0008g06130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00200.t01
VIT_02s0025g04630.t01
VIT_03s0038g00050.t01
VIT_04s0008g06130.t01
VIT_06s0004g07910.t01
VIT_08s0007g01290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32040.1	VIT_02s0025g04630.t01	AT1G62990.1	15781858
AT4G32040.1	VIT_03s0038g00050.t01	AT2G16400.1	15781858
AT4G32040.1	VIT_04s0008g06130.t01	AT4G32040.1	15781858
AT4G32040.1	VIT_06s0004g07910.t01	AT5G01840.1	15781858
AT4G32040.1	VIT_08s0007g01290.t01	AT5G02030.1	15781858
AT4G32040.1	VIT_02s0025g00200.t01	AT5G41410.1	11701881
AT4G32040.1	VIT_02s0025g00200.t01	AT5G41410.1	17873098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G454600.1	Wheat	nucleus	34.89	84.66
TraesCS6D01G134800.1	Wheat	nucleus	37.7	77.78
VIT_11s0118g00800.t01	Wine grape	nucleus	71.66	71.16
OQU84501	Sorghum	nucleus	49.41	68.95
KXG20488	Sorghum	nucleus	50.82	68.03
TraesCS6B01G173900.1	Wheat	nucleus	47.31	67.79
Os02t0182800-01	Rice	nucleus	49.65	67.73
Zm00001d046568_P001	Maize	nucleus	50.12	67.72
VIT_02s0025g04630.t01	Wine grape	nucleus	46.14	67.7
TraesCS6A01G145500.1	Wheat	nucleus	48.48	67.65
Os06t0646600-01	Rice	nucleus	51.05	67.49
TraesCS1B01G135600.1	Wheat	nucleus	44.26	67.26
TraesCS7D01G501000.1	Wheat	nucleus	48.48	66.99
HORVU6Hr1G028610.2	Barley	nucleus	48.01	66.34
Zm00001d053749_P002	Maize	nucleus	48.48	64.89
Zm00001d015549_P001	Maize	nucleus	49.18	64.62
TraesCS7B01G423100.2	Wheat	nucleus	48.48	61.79
HORVU7Hr1G114650.2	Barley	nucleus	46.37	61.3
Bra020491.1-P	Field mustard	nucleus	55.74	60.56
CDX68812	Canola	nucleus	51.99	59.36
AT4G32040.1	Thale cress	nucleus	52.93	59.01
CDX75215	Canola	nucleus	51.52	58.82
CDX70374	Canola	nucleus	40.52	57.28
CDY13472	Canola	nucleus	51.05	57.07
CDX72343	Canola	nucleus	50.35	53.75
TraesCS7A01G511800.2	Wheat	nucleus	48.48	51.75
VIT_14s0060g01180.t01	Wine grape	nucleus	22.01	30.32
VIT_17s0000g08710.t01	Wine grape	nucleus	21.78	29.15
VIT_01s0127g00210.t01	Wine grape	nucleus	20.14	27.04
VIT_18s0001g08380.t01	Wine grape	nucleus	22.25	25.68
VIT_12s0059g01190.t01	Wine grape	nucleus	20.61	24.38
VIT_10s0116g00190.t01	Wine grape	nucleus	19.44	23.71
VIT_15s0021g01750.t01	Wine grape	nucleus	10.3	19.21

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100254363	wikigene:100254363	MapMan:15.5.3.4	ProteinID:CCB46841	ProteinID:CCB46841.1
InterPro:ELK_dom	UniProt:F6H3V2	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
EntrezGene:LOC100254363	wikigene:LOC100254363	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	TIGR:TC62600	TIGR:TC63082	TIGR:TC68843
UniParc:UPI0001983185	ArrayExpress:VIT_04s0008g06130	EnsemblPlantsGene:VIT_04s0008g06130	EnsemblPlants:VIT_04s0008g06130.t01	unigene:Vvi.24459	RefSeq:XP_002285407
RefSeq:XP_002285407.2	RefSeq:XP_010648713.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:5879285..5888426

Molecular Weight (calculated)

47615.5 Da

IEP (calculated)

5.551

GRAVY (calculated)

-0.679

Length

427 amino acids

Sequence
(BLAST)

001: MAFHNQLSQE MALQHFTEQH LGENASVLRT ILPDHLAQSS PEGAGKAPEN QQQPVQLGTG PTWLNHAIQL RQQSQYSDNN FLNFLQRNTN DVVAAGDEVS
101: NDSIIATAMS HESADLANNN SNNSNVKVNN SGNGAEIAES GDVAVNWQNA RQKAEILAHP LYEQLLSSHV ACLRIATPVD QLPRIDAQLA QSQHVVSKYS
201: ALGHGNSQML GDEKELDQFM THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDEEDQI DSDANLFDGS LEGADSMGFG
301: PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKAKLVQET GLQLKQINNW FINQRKRNWH
401: SNPSTSTVLK SKRKSNAGEN SSGDRFM

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.