Factsheet for VIT_14s0060g01180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33819	Soybean	nucleus	65.48	68.58
KRG90534	Soybean	nucleus	65.48	66.12
GSMUA_Achr11P...	Banana	nucleus	61.29	61.69
GSMUA_Achr8P10550_001	Banana	nucleus	60.97	61.56
KRH68434	Soybean	nucleus	60.32	60.91
KRG96717	Soybean	nucleus	60.97	60.77
GSMUA_Achr2P00410_001	Banana	nucleus	59.68	60.66
EES00633	Sorghum	nucleus	56.45	59.52
PGSC0003DMT400007159	Potato	nucleus	61.29	59.01
Os01t0302500-01	Rice	nucleus	57.1	58.8
EES18954	Sorghum	nucleus	56.77	58.09
Zm00001d040611_P002	Maize	nucleus	55.16	57.97
Zm00001d010948_P001	Maize	nucleus	56.77	57.33
HORVU1Hr1G015720.1	Barley	nucleus	56.45	57.19
TraesCS1A01G072800.1	Wheat	nucleus	56.45	57.19
TraesCS1D01G075700.1	Wheat	nucleus	56.45	57.19
TraesCS1B01G091700.1	Wheat	nucleus	56.13	56.86
Zm00001d035439_P001	Maize	nucleus	54.52	56.71
Solyc01g100510.2.1	Tomato	nucleus	60.97	56.42
Os05t0129700-01	Rice	nucleus	55.48	55.31
TraesCS1D01G075600.1	Wheat	nucleus	53.55	54.25
TraesCS1A01G072700.1	Wheat	nucleus	53.23	53.75
TraesCS1B01G091600.1	Wheat	nucleus	52.26	52.77
VIT_17s0000g08710.t01	Wine grape	nucleus	51.61	50.16
VIT_01s0127g00210.t01	Wine grape	nucleus	49.68	48.43
VIT_15s0021g01750.t01	Wine grape	nucleus	28.39	38.43
VIT_10s0116g00190.t01	Wine grape	nucleus	42.58	37.71
VIT_18s0001g08380.t01	Wine grape	nucleus	43.55	36.49
VIT_12s0059g01190.t01	Wine grape	nucleus	41.94	36.01
VIT_02s0025g04630.t01	Wine grape	nucleus	27.74	29.55
VIT_04s0008g06130.t01	Wine grape	nucleus	30.32	22.01
VIT_11s0118g00800.t01	Wine grape	nucleus	29.03	20.93

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100264808	wikigene:100264808	MapMan:15.5.3.4	UniProt:A5C7Q8	EMBL:AM485276
ProteinID:CAN77695	ProteinID:CAN77695.1	ProteinID:CBI39595	ProteinID:CBI39595.3	InterPro:ELK_dom	EMBL:FN596746
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EntrezGene:LOC100264808
wikigene:LOC100264808	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF102	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI00015225EC	ArrayExpress:VIT_14s0060g01180	EnsemblPlantsGene:VIT_14s0060g01180
EnsemblPlants:VIT_14s0060g01180.t01	unigene:Vvi.20404	RefSeq:XP_002277931	RefSeq:XP_002277931.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:928397..935619

Molecular Weight (calculated)

34899.9 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.701

Length

310 amino acids

Sequence
(BLAST)

001: MDDLYRLQHE GISISGANAA AATIDFRRSV ENSNVYRFES VETEAGMSDL IKSQIVNHPR YPNLVSAYIE CRKVGAPPEM ASLLEEIGRE SQPMNSRSGE
101: IGADPELDEF MESYCEVLHR YKEELSKPFD EATSFLSDIE SQLSNLCKGA LTAGTSGSYY SDEAAGTSEE ELSCGEAEVS ESQESLGARP GDQELKEMLM
201: RKYSGYLSSL RKEFLKKRKK GKLPKDARTM LLEWWNTHYR WPYPTEDEKL KLSEVTGLDQ KQINNWFINQ RKRHWKPSED MRFALIDGVS GNMGGGPVFL
301: DTRGGTGSNI

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.