Factsheet for Solyc01g100510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007159	Potato	nucleus	87.46	90.99
VIT_14s0060g01180.t01	Wine grape	nucleus	56.42	60.97
KRH33819	Soybean	nucleus	51.34	58.11
EES00633	Sorghum	nucleus	50.15	57.14
Zm00001d040611_P002	Maize	nucleus	49.85	56.61
KRG90534	Soybean	nucleus	51.64	56.35
GSMUA_Achr8P10550_001	Banana	nucleus	51.34	56.03
GSMUA_Achr11P...	Banana	nucleus	50.75	55.19
GSMUA_Achr2P00410_001	Banana	nucleus	50.15	55.08
EES18954	Sorghum	nucleus	49.55	54.79
Os01t0302500-01	Rice	nucleus	48.96	54.49
Zm00001d035439_P001	Maize	nucleus	48.36	54.36
Zm00001d010948_P001	Maize	nucleus	49.55	54.07
Os05t0129700-01	Rice	nucleus	49.55	53.38
HORVU1Hr1G015720.1	Barley	nucleus	48.36	52.94
TraesCS1D01G075700.1	Wheat	nucleus	48.36	52.94
TraesCS1B01G091700.1	Wheat	nucleus	48.36	52.94
TraesCS1A01G072800.1	Wheat	nucleus	48.36	52.94
KRH68434	Soybean	nucleus	48.36	52.77
KRG96717	Soybean	nucleus	47.76	51.45
TraesCS1D01G075600.1	Wheat	nucleus	45.97	50.33
TraesCS1A01G072700.1	Wheat	nucleus	45.07	49.19
TraesCS1B01G091600.1	Wheat	nucleus	44.48	48.53
Solyc05g005090.2.1	Tomato	nucleus	40.6	42.5
Solyc02g081120.2.1	Tomato	nucleus	40.0	37.85
Solyc04g077210.2.1	Tomato	nucleus	39.7	37.46
Solyc03g112740.1.1	Tomato	nucleus	16.42	29.89
Solyc08g080120.2.1	Tomato	nucleus	25.67	27.74
Solyc12g010410.1.1	Tomato	nucleus	25.97	26.44
Solyc08g041820.2.1	Tomato	nucleus	26.57	25.5
Solyc07g007120.2.1	Tomato	nucleus	27.46	21.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EMBL:AF533597	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791
PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF102
UniProt:Q84ZW2	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc01g100510.2	EnsemblPlants:Solyc01g100510.2.1	UniParc:UPI0000003B1C	SEG:seg	:	:

Description

Knotted protein TKN4 [Source:UniProtKB/TrEMBL;Acc:Q84ZW2]

Coordinates

chr1:-:90514327..90518777

Molecular Weight (calculated)

37914.3 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.708

Length

335 amino acids

Sequence
(BLAST)

001: MMDELSKLHS AIVCSHSRRQ QEVEVEAEAG PTIINNTTTS FAAVHHHYCQ LEAAVAADHN HHQNNTKSTT NMSDLIKAQI ANHPLYPNLL SAYLQCRKVG
101: APQEMTSILD EISKENNLIS SSRHSSEIGA DPELDEFMES YCAVLVKYKE EFSKPFDEAT SFLSNIESQL SSLCKDNLIT STSFNNYISD EAGGSSDEDL
201: GCEEMEAADS QESPANCEGD NELKEMLMRK YSGYLSSLRK EFLKKRKKGK LPKEARIVLL DWWKNHYRWP YPTEEEKNRL SEMTGLDQKQ INNWFINQRK
301: RHWRPSEDMK FALMEGVSAG SMYFDGSGGT GNIGT

Best Arabidopsis Sequence Match ( AT1G70510.1 )
(BLAST)

001: MDRMCGFRST EDYSEKATLM MPSDYQSLIC STTGDNQRLF GSDELATALS SELLPRIRKA EDNFSLSVIK SKIASHPLYP RLLQTYIDCQ KVGAPMEIAC
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE

Arabidopsis Description

KNAT2KNOTTED-like from Arabidopsis thaliana 2 [Source:TAIR;Acc:AT1G70510]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.