Factsheet for Solyc12g010410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020407	Potato	nucleus	96.96	93.82
Os08t0292900-01	Rice	nucleus, plasma membrane	47.42	73.93
KRH20116	Soybean	nucleus	66.26	63.01
KRH03552	Soybean	nucleus	65.96	62.9
Solyc08g041820.2.1	Tomato	nucleus	63.53	59.89
KRH37876	Soybean	nucleus	66.87	59.62
KRH12889	Soybean	nucleus	66.87	59.46
GSMUA_Achr3P13370_001	Banana	nucleus	64.13	59.1
GSMUA_Achr7P05170_001	Banana	nucleus	69.0	57.76
GSMUA_Achr1P26000_001	Banana	nucleus	63.22	56.37
GSMUA_Achr4P20400_001	Banana	nucleus	65.35	55.99
Solyc07g007120.2.1	Tomato	nucleus	72.34	55.22
GSMUA_Achr10P...	Banana	nucleus	65.05	54.59
Solyc08g080120.2.1	Tomato	nucleus	51.06	54.19
VIT_11s0118g00800.t01	Wine grape	nucleus	66.87	51.16
Solyc01g100510.2.1	Tomato	nucleus	26.44	25.97
Solyc05g005090.2.1	Tomato	nucleus	23.1	23.75
Solyc04g077210.2.1	Tomato	nucleus	24.92	23.1
Solyc02g081120.2.1	Tomato	nucleus	24.01	22.32
Solyc03g112740.1.1	Tomato	nucleus	10.94	19.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	UniProt:K4DCC8	InterPro:KNOX1
InterPro:KNOX2	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213
PANTHER:PTHR11850	PANTHER:PTHR11850:SF122	SMART:SM00389	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc12g010410.1	EnsemblPlants:Solyc12g010410.1.1	UniParc:UPI0002769E59	SEG:seg	:	:

Description

Homeobox protein knotted-1-like 5 [Source:Projected from Arabidopsis thaliana (AT4G32040) UniProtKB/Swiss-Prot;Acc:P48002]

Coordinates

chr12:+:3455837..3459360

Molecular Weight (calculated)

38100.1 Da

IEP (calculated)

5.764

GRAVY (calculated)

-0.980

Length

329 amino acids

Sequence
(BLAST)

001: MEFHDHFSQE LGLQQQQQQH NVDDDVSDQS MNFSVKLSQQ YRDEVNNNEH NNNNNNSNVW DQSEKYKADI LNHHLSEQLL SAHVACLRIA TPVDQLPRID
101: EQLTESQNLV AKYYVVGQSQ RSLDDKELDQ FMANYVLLLS SFKEQLQQHV RVHAMEAVMA CWDLDQSLQT LTGVASGEGT GATMSDDDED NQVESETYCH
201: YNGILDGQDS NGFGPLVPTE NERFLMERVR QELKQEFKQD YKGKIVDIRE EILRKRRAGK LPGDTTSALK AWWKSHSKWP YPTEEDKAKL VKDTGLQLKQ
301: VNNWFINQRK RNWHSTPSSS SAQKSKRKR

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.