Factsheet for Solyc07g007120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078990	Potato	nucleus	94.9	98.55
Os08t0292900-01	Rice	nucleus, plasma membrane	40.6	82.94
Solyc12g010410.1.1	Tomato	nucleus	55.22	72.34
GSMUA_Achr3P13370_001	Banana	nucleus	59.4	71.71
KRH03552	Soybean	nucleus	56.61	70.72
KRH20116	Soybean	nucleus	56.61	70.52
Solyc08g041820.2.1	Tomato	nucleus	56.84	70.2
KRH37876	Soybean	nucleus	58.93	68.83
KRH12889	Soybean	nucleus	58.7	68.38
GSMUA_Achr7P05170_001	Banana	nucleus	61.72	67.68
GSMUA_Achr1P26000_001	Banana	nucleus	57.54	67.21
GSMUA_Achr4P20400_001	Banana	nucleus	59.16	66.41
GSMUA_Achr10P...	Banana	nucleus	59.16	65.05
VIT_11s0118g00800.t01	Wine grape	nucleus	62.18	62.33
Solyc08g080120.2.1	Tomato	nucleus	43.62	60.65
Solyc01g100510.2.1	Tomato	nucleus	21.35	27.46
Solyc04g077210.2.1	Tomato	nucleus	21.11	25.63
Solyc05g005090.2.1	Tomato	nucleus	18.33	24.69
Solyc02g081120.2.1	Tomato	nucleus	19.72	24.01
Solyc03g112740.1.1	Tomato	nucleus	9.74	22.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	UniProt:K4CBI3	InterPro:KNOX1
InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc07g007120.2	EnsemblPlants:Solyc07g007120.2.1	UniParc:UPI000276ABC3	SEG:seg

Description

No Description!

Coordinates

chr7:+:1876090..1882613

Molecular Weight (calculated)

48018.3 Da

IEP (calculated)

5.963

GRAVY (calculated)

-0.944

Length

431 amino acids

Sequence
(BLAST)

001: MEFQDHFSQE MVLHQQQQQQ QQQQNAVLRS MLPESPHHDA RKSPPTWLNT SLLRQQHSQF GNASSPSSAA AAAAVAGGNN FLHLQTSNSD SSNSNQWLSP
101: TAAAGGGGNG GGGGHNDELS ESMNFAKKMS QQHSGGGEEN NNNNNNNNNN NNNEEENSWE REKCKADILN HPLYDQLLSA HVSCLRIATP VDQLPRIDAQ
201: LAQSQNVVAK YSVLGQGQPP LDDKDLDQFM THYVLLLSSF KEQLQQHVRV HAMEAVMACW ELEQSLQSLT GVAPGEGTGA TMSDDDDDQA DSDTNFLDGG
301: FDGPDSMGFG PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW
401: FINQRKRNWH SNPSTSSSQK SKRKSAGEIK Q

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.