Factsheet for Solyc08g041820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120190.2.1
Solyc04g077210.2.1
Solyc08g041820.2.1
Solyc08g065420.2.1
Solyc08g080120.2.1
Solyc08g081400.2.1
Solyc09g011380.2.1
Solyc10g086640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11060.1	Solyc08g080120.2.1	AT1G62990.1	15781858
AT5G11060.1	Solyc04g077210.2.1	AT4G08150.1	15781858
AT5G11060.1	Solyc08g065420.2.1	AT4G32980.1	15781858
AT5G11060.1	Solyc08g041820.2.1	AT5G25220.1	15781858
AT5G11060.1	Solyc08g081400.2.1	AT5G41410.1	11701881
AT5G25220.1	Solyc03g120190.2.1	AT1G79960.1	15781858
AT5G25220.1	Solyc09g011380.2.1	AT5G02030.1	15781858
AT5G25220.1	Solyc10g086640.1.1	AT5G02030.1	15781858
AT5G25220.1	Solyc08g041820.2.1	AT5G11060.1	15781858
AT5G25220.1	Solyc08g081400.2.1	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040351	Potato	nucleus	96.28	92.05
TraesCS5B01G454600.1	Wheat	nucleus	42.98	85.23
CDX88165	Canola	nucleus	68.48	79.93
TraesCS6D01G134800.1	Wheat	nucleus	46.7	78.74
TraesCS6B01G173900.1	Wheat	nucleus	57.31	67.11
OQU84501	Sorghum	nucleus	58.74	66.99
TraesCS1B01G135600.1	Wheat	nucleus	53.87	66.9
TraesCS6A01G145500.1	Wheat	nucleus	57.59	65.69
TraesCS7D01G501000.1	Wheat	nucleus	57.88	65.37
Zm00001d046568_P001	Maize	nucleus	58.45	64.56
Os02t0182800-01	Rice	nucleus	57.88	64.54
HORVU6Hr1G028610.2	Barley	nucleus	57.02	64.4
KXG20488	Sorghum	nucleus	58.74	64.26
Os06t0646600-01	Rice	nucleus	59.31	64.09
Zm00001d053749_P002	Maize	nucleus	58.45	63.95
Bra006085.1-P	Field mustard	nucleus	70.49	63.73
CDX78407	Canola	nucleus	70.49	63.73
KRH52385	Soybean	nucleus	72.49	63.57
Solyc12g010410.1.1	Tomato	nucleus	59.89	63.53
AT5G11060.1	Thale cress	nucleus	71.35	63.36
KRH61712	Soybean	nucleus	74.21	63.02
Zm00001d015549_P001	Maize	nucleus	58.45	62.77
Solyc08g080120.2.1	Tomato	nucleus	55.3	62.26
CDY05371	Canola	nucleus	71.92	62.13
HORVU7Hr1G114650.2	Barley	nucleus	56.45	60.99
KRH05245	Soybean	nucleus	71.35	60.58
TraesCS7B01G423100.2	Wheat	nucleus	57.59	60.0
KRH15810	Soybean	nucleus	70.77	59.95
CDY05480	Canola	nucleus	71.92	59.76
AT5G25220.1	Thale cress	nucleus	73.35	59.4
Bra009826.1-P	Field mustard	nucleus	69.34	58.45
Solyc07g007120.2.1	Tomato	nucleus	70.2	56.84
CDX80491	Canola	nucleus	68.77	54.05
TraesCS7A01G511800.2	Wheat	nucleus	57.59	50.25
Solyc01g100510.2.1	Tomato	nucleus	25.5	26.57
Solyc04g077210.2.1	Tomato	nucleus	26.36	25.92
Solyc02g081120.2.1	Tomato	nucleus	26.07	25.71
Solyc05g005090.2.1	Tomato	nucleus	22.92	25.0
Solyc03g112740.1.1	Tomato	nucleus	10.03	19.02

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	UniProt:K4CK43	InterPro:KNOX1
InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g041820.2	EnsemblPlants:Solyc08g041820.2.1	UniParc:UPI000276C24B	:

Description

No Description!

Coordinates

chr8:-:25692517..25696868

Molecular Weight (calculated)

39651.6 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.752

Length

349 amino acids

Sequence
(BLAST)

001: MDMPDQNSPI LMTSLPEQDV KPLEHQQPPP TSLNREILLP QTQYTGESNS NQWLSRSILQ RNIQASNDSD LTKDEFGESE AVNWQNAGYK SEILAHPLFE
101: QLLSAHVACL RIATPVDQLP RIDAQLAQSQ QIVGKYSGLG HGNLSDDKEL DQFLTHYVLL LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE
201: GTGATMSDDE DEQVDSDANL FEGSLDGHDS MGFGPLIPTE SERSLMERVR QELKHELKQG YKEKLVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP
301: YPTEEDKAKL VEETGLQLKQ INNWFINQRK RNWHSNPSSS TALKSKRKR

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.