Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G134800.1 | Wheat | nucleus | 69.13 | 99.52 |
| TraesCS6A01G145500.1 | Wheat | nucleus | 98.66 | 96.08 |
| HORVU6Hr1G028610.2 | Barley | nucleus | 99.33 | 95.79 |
| TraesCS5B01G454600.1 | Wheat | nucleus | 54.03 | 91.48 |
| OQU84501 | Sorghum | nucleus | 91.61 | 89.22 |
| Os02t0182800-01 | Rice | nucleus | 93.29 | 88.82 |
| Zm00001d053749_P002 | Maize | nucleus | 91.28 | 85.27 |
| Zm00001d015549_P001 | Maize | nucleus | 89.93 | 82.46 |
| TraesCS1B01G135600.1 | Wheat | nucleus | 72.48 | 76.87 |
| TraesCS7B01G423100.2 | Wheat | nucleus | 80.2 | 71.34 |
| CDX88165 | Canola | nucleus | 67.79 | 67.56 |
| KRG98594 | Soybean | extracellular | 16.11 | 58.54 |
| Solyc08g041820.2.1 | Tomato | nucleus | 67.11 | 57.31 |
| PGSC0003DMT400040351 | Potato | nucleus | 67.79 | 55.34 |
| TraesCS4B01G346100.1 | Wheat | nucleus | 57.05 | 54.49 |
| CDX78407 | Canola | nucleus | 66.78 | 51.55 |
| Bra006085.1-P | Field mustard | nucleus | 66.78 | 51.55 |
| KRH52385 | Soybean | nucleus | 68.46 | 51.26 |
| CDY05371 | Canola | nucleus | 69.13 | 50.99 |
| Bra028554.1-P | Field mustard | nucleus | 65.77 | 50.65 |
| KRH61712 | Soybean | nucleus | 69.8 | 50.61 |
| AT5G11060.1 | Thale cress | nucleus | 66.44 | 50.38 |
| CDY51104 | Canola | nucleus | 66.11 | 50.13 |
| CDX85732 | Canola | nucleus | 66.11 | 50.13 |
| KRH05245 | Soybean | nucleus | 68.79 | 49.88 |
| KRH15810 | Soybean | nucleus | 68.79 | 49.76 |
| CDX75215 | Canola | nucleus | 62.42 | 49.73 |
| Bra011317.1-P | Field mustard | nucleus | 62.08 | 49.47 |
| CDX68812 | Canola | nucleus | 62.08 | 49.47 |
| AT4G32040.1 | Thale cress | nucleus | 63.42 | 49.35 |
| CDY05480 | Canola | nucleus | 68.79 | 48.81 |
| CDY13472 | Canola | nucleus | 61.74 | 48.17 |
| Bra023965.1-P | Field mustard | nucleus | 61.74 | 48.04 |
| AT5G25220.1 | Thale cress | nucleus | 69.13 | 47.8 |
| VIT_04s0008g06130.t01 | Wine grape | nucleus | 67.79 | 47.31 |
| Bra009826.1-P | Field mustard | nucleus | 65.1 | 46.86 |
| CDX72343 | Canola | nucleus | 62.42 | 46.5 |
| CDX80491 | Canola | nucleus | 68.12 | 45.72 |
| Bra020491.1-P | Field mustard | nucleus | 58.05 | 44.02 |
| CDX70374 | Canola | nucleus | 42.62 | 42.05 |
| TraesCS1B01G091700.1 | Wheat | nucleus | 30.87 | 30.07 |
| TraesCS1B01G091600.1 | Wheat | nucleus | 28.19 | 27.36 |
| TraesCS5B01G410600.1 | Wheat | nucleus | 28.19 | 26.58 |
| TraesCS4B01G021900.2 | Wheat | nucleus | 28.19 | 25.85 |
| TraesCS4B01G057900.1 | Wheat | nucleus | 30.54 | 25.07 |
| TraesCS2B01G268200.1 | Wheat | nucleus | 28.86 | 24.78 |
| TraesCS4B01G022000.1 | Wheat | nucleus | 22.82 | 22.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | ncoils:Coil | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 |
| InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF142 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 |
| SMART:SM01256 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS6B01G173900 | EnsemblPlants:TraesCS6B01G173900.1 | TIGR:cd00086 | SEG:seg |
Description
No Description!
Coordinates
chr6B:-:188189775..188195517
Molecular Weight (calculated)
32461.1 Da
IEP (calculated)
5.885
GRAVY (calculated)
-0.605
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAAAAAAA ASSPNPSFSP GGGGGEREKA AIAAHPLYER LLEAHVACLR VATPVDQLPR IDAQIAARPP PLAAAAAAAG GPSGGEELDL FMTHYVLLLC
101: SFKEQLQQHV RVHAMEAVMG CWELEQSLQS LTGASPGEGT GATMSDDEDN QVDSETNMFD GNDGSDGMGF GPLILTEGER SLIERVRHEL KSELKQGYKE
201: KLVDIREEIM RKRRAGKLPG DTAATLKAWW QAHSKWPYPT EDDKARLVQE TGLQLKQINN WFINQRKRNW HSSNTASSSE KTKKKRNVTG NDGTEQSW
101: SFKEQLQQHV RVHAMEAVMG CWELEQSLQS LTGASPGEGT GATMSDDEDN QVDSETNMFD GNDGSDGMGF GPLILTEGER SLIERVRHEL KSELKQGYKE
201: KLVDIREEIM RKRRAGKLPG DTAATLKAWW QAHSKWPYPT EDDKARLVQE TGLQLKQINN WFINQRKRNW HSSNTASSSE KTKKKRNVTG NDGTEQSW
001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A
Arabidopsis Description
KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.