Factsheet for TraesCS6D01G041100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G135600.1
TraesCS5B01G454600.1
TraesCS6A01G145500.1
TraesCS6B01G173900.1
TraesCS6D01G134800.1
TraesCS7A01G511800.2
TraesCS7B01G423100.2
TraesCS7D01G501000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	TraesCS1B01G135600.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS5B01G454600.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS6A01G145500.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS6B01G173900.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS6D01G134800.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS7A01G511800.2	AT5G25220.1	15781858
AT1G79960.1	TraesCS7B01G423100.2	AT5G25220.1	15781858
AT1G79960.1	TraesCS7D01G501000.1	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G035700.1	Wheat	nucleus	91.63	90.12
HORVU6Hr1G006440.1	Barley	cytosol	81.59	78.95
TraesCS6B01G050100.1	Wheat	nucleus	77.82	77.82
Zm00001d044357_P001	Maize	cytosol	56.07	56.3
EES00995	Sorghum	nucleus	53.97	54.89
EER92063	Sorghum	nucleus	53.56	54.24
GSMUA_Achr8P04020_001	Banana	mitochondrion	36.82	33.59
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	34.31	29.5
KRH09849	Soybean	mitochondrion, nucleus	30.13	28.92
Solyc03g120190.2.1	Tomato	plastid	32.22	28.0
PGSC0003DMT400014515	Potato	nucleus	32.22	26.74
CDY58777	Canola	nucleus, plastid	28.03	23.51
CDX87287	Canola	nucleus, plastid	28.03	23.43
Bra035202.1-P	Field mustard	nucleus, plastid	28.03	23.43
AT1G79960.1	Thale cress	nucleus, plastid	28.03	22.79
KRH47051	Soybean	nucleus	26.36	22.34
TraesCS5D01G195300.1	Wheat	nucleus	24.69	21.69
CDY37564	Canola	plastid	25.1	20.34
Bra008500.1-P	Field mustard	plastid	25.1	20.34
CDY41111	Canola	plastid	25.1	20.13
TraesCS4D01G273800.1	Wheat	mitochondrion	16.74	19.42
KRH44372	Soybean	nucleus	10.88	13.83

Protein Annotations

EnsemblPlants:TraesCS6D01G041100.1	EnsemblPlantsGene:TraesCS6D01G041100	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	PFAM:PF04844	PFscan:PS51754	SEG:seg	TIGRFAMs:TIGR01568	MapMan:15.5.37

Description

No Description!

Coordinates

chr6D:+:16772310..16773029

Molecular Weight (calculated)

26954.6 Da

IEP (calculated)

7.303

GRAVY (calculated)

-0.646

Length

239 amino acids

Sequence
(BLAST)

001: MEDERKRAKL RKSLQLCISK KLKKIPPIHI PSSTIPATIA SSRRLLSTCR FPRTPSLDMD QAATATTNNN NSGGHAATLS DVDRFLFDNF RSLYIHDHDD
101: DNARFSSSPR TSSTSIIDET QLTAGTTSLS NSVKEDTGEA RPGDDTSDDA AIVLFSMDPY TDFRRSMQNM IKMHHGLESQ SLDWDFLEEL LFYYLQLNDQ
201: SVHRHILKAF ADLTAGTQRD IPACGKPHWA DKSVRSRKY

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.