CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG20488
OQU84501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	KXG20488	AT5G25220.1	15781858
AT1G79960.1	OQU84501	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00995	Sorghum	nucleus	84.75	85.11
Zm00001d044357_P001	Maize	cytosol	63.14	62.6
TraesCS6B01G050100.1	Wheat	nucleus	56.36	55.65
TraesCS6D01G041100.1	Wheat	nucleus, plastid	54.24	53.56
HORVU6Hr1G006440.1	Barley	cytosol	55.51	53.04
TraesCS6A01G035700.1	Wheat	nucleus	54.24	52.67
GSMUA_Achr8P04020_001	Banana	mitochondrion	37.71	33.97
KRH09849	Soybean	mitochondrion, nucleus	30.08	28.51
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	31.36	26.62
Solyc03g120190.2.1	Tomato	plastid	27.54	23.64
EER96623	Sorghum	nucleus	26.27	23.05
PGSC0003DMT400014515	Potato	nucleus	27.97	22.92
KRH47051	Soybean	nucleus	26.69	22.34
Bra035202.1-P	Field mustard	nucleus, plastid	26.69	22.03
CDX87287	Canola	nucleus, plastid	26.69	22.03
CDY58777	Canola	nucleus, plastid	26.27	21.75
AT1G79960.1	Thale cress	nucleus, plastid	26.69	21.43
Bra008500.1-P	Field mustard	plastid	26.69	21.36
CDY37564	Canola	plastid	26.27	21.02
EER92828	Sorghum	mitochondrion	18.64	20.95
CDY41111	Canola	plastid	25.42	20.13
KRH44372	Soybean	nucleus	13.56	17.02

Protein Annotations

MapMan:15.5.37	EntrezGene:8066233	UniProt:C5WVH4	EnsemblPlants:EER92063	ProteinID:EER92063	ProteinID:EER92063.1
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	EnsemblPlantsGene:SORBI_3001G325100	TIGRFAMs:TIGR01568	UniParc:UPI0001A81F7C	RefSeq:XP_002465065.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:61228658..61229368

Molecular Weight (calculated)

26125.4 Da

IEP (calculated)

6.344

GRAVY (calculated)

-0.577

Length

236 amino acids

Sequence
(BLAST)

001: MEDDRKRTRL RKSLQLYLSR TLKKIPPIHI PSSAIPANIT SARLLSTCRF PRTPSLDLDG DHAAAAGADD NSNKDQAATL SDVDRFLFDN FRSLYIHDNN
101: DPSSASTSTS VVNGTPPAAE TSSSSESASE DVKEVRPGEE GGDSAAIVVF SMDPYTDFRR SMQNMVKMHH GCLCQPLDWD FLEELLFFYL QLNDRAGHKH
201: ILKAFADLTA GTHHMASSTT GNAEWADKSL RSQRNH

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.