CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG20488
OQU84501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	KXG20488	AT5G25220.1	15781858
AT1G79960.1	OQU84501	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020198_P001	Maize	nucleus	62.83	66.02
HORVU5Hr1G056810.1	Barley	nucleus	46.84	46.84
TraesCS5D01G195300.1	Wheat	nucleus	45.35	44.85
TraesCS5A01G195700.1	Wheat	nucleus, plastid	43.87	43.38
TraesCS5B01G187700.1	Wheat	nucleus	43.49	43.17
GSMUA_Achr8P04020_001	Banana	mitochondrion	28.62	29.39
EES00995	Sorghum	nucleus	23.05	26.38
EER92063	Sorghum	nucleus	23.05	26.27
KRH09849	Soybean	mitochondrion, nucleus	23.42	25.3
EER92828	Sorghum	mitochondrion	17.84	22.86
KRH47051	Soybean	nucleus	23.42	22.34
CDY58777	Canola	nucleus, plastid	21.93	20.7
CDX87287	Canola	nucleus, plastid	21.93	20.63
Bra035202.1-P	Field mustard	nucleus, plastid	21.93	20.63
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	21.19	20.5
AT1G79960.1	Thale cress	nucleus, plastid	22.3	20.41
Solyc03g120190.2.1	Tomato	plastid	20.82	20.36
PGSC0003DMT400014515	Potato	nucleus	21.19	19.79
CDY37564	Canola	plastid	19.7	17.97
Bra008500.1-P	Field mustard	plastid	19.7	17.97
CDY41111	Canola	plastid	19.7	17.79
KRH44372	Soybean	nucleus	11.9	17.02

Protein Annotations

MapMan:15.5.37	EntrezGene:8055564	UniProt:C5XAM4	EnsemblPlants:EER96623	ProteinID:EER96623	ProteinID:EER96623.1
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF34	EnsemblPlantsGene:SORBI_3002G179200	TIGRFAMs:TIGR01568	UniParc:UPI0001A839E5	RefSeq:XP_002460102.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:56040684..56042511

Molecular Weight (calculated)

28981.3 Da

IEP (calculated)

7.633

GRAVY (calculated)

-0.750

Length

269 amino acids

Sequence
(BLAST)

001: MEDEEEEDKS TKADDVGCKK NVTRLQRSFL HLSRAIGKLH GRRGHANANG ETSLSSSSSA ATSFLSGCMH PRTHSFASGR HHRHKHDDDD DGSGDALAVN
101: FRSLRISLAA SAAPVVPGDD EGDSSSAQDC CYGDGGGRGS EADDEPNKAV VAQGAGVAVA TLSAAPYEDF RRSMREMVDA GAAAAAVDWD FMEELLFCYL
201: RLNDRAVHKD ILRAFTDTVA AIRRHRHRRR AANKSRRTRR RRRRQPGAGG DGRGDCDGAG EAVTTSISS

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.