Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G173900.1 | Wheat | nucleus | 99.52 | 69.13 |
| TraesCS6A01G145500.1 | Wheat | nucleus | 99.03 | 66.99 |
| HORVU6Hr1G028610.2 | Barley | nucleus | 99.03 | 66.34 |
| Os02t0182800-01 | Rice | nucleus | 93.24 | 61.66 |
| OQU84501 | Sorghum | nucleus | 88.89 | 60.13 |
| KRG98594 | Soybean | extracellular | 23.19 | 58.54 |
| TraesCS7D01G501000.1 | Wheat | nucleus | 85.99 | 57.61 |
| Zm00001d053749_P002 | Maize | nucleus | 88.41 | 57.37 |
| Zm00001d015549_P001 | Maize | nucleus | 88.41 | 56.31 |
| CDX88165 | Canola | nucleus | 77.78 | 53.85 |
| Solyc08g041820.2.1 | Tomato | nucleus | 78.74 | 46.7 |
| PGSC0003DMT400040351 | Potato | nucleus | 79.23 | 44.93 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 65.22 | 43.41 |
| CDX78407 | Canola | nucleus | 75.85 | 40.67 |
| Bra006085.1-P | Field mustard | nucleus | 75.85 | 40.67 |
| KRH52385 | Soybean | nucleus | 77.78 | 40.45 |
| Bra028554.1-P | Field mustard | nucleus | 75.36 | 40.31 |
| CDX75215 | Canola | nucleus | 72.46 | 40.11 |
| AT5G11060.1 | Thale cress | nucleus | 75.85 | 39.95 |
| CDX85732 | Canola | nucleus | 75.85 | 39.95 |
| KRH05245 | Soybean | nucleus | 79.23 | 39.9 |
| CDY05371 | Canola | nucleus | 77.78 | 39.85 |
| Bra011317.1-P | Field mustard | nucleus | 71.98 | 39.84 |
| KRH15810 | Soybean | nucleus | 79.23 | 39.81 |
| CDY51104 | Canola | nucleus | 75.36 | 39.69 |
| KRH61712 | Soybean | nucleus | 78.74 | 39.66 |
| CDX68812 | Canola | nucleus | 71.5 | 39.57 |
| AT4G32040.1 | Thale cress | nucleus | 72.95 | 39.43 |
| CDY13472 | Canola | nucleus | 71.01 | 38.48 |
| Bra023965.1-P | Field mustard | nucleus | 71.01 | 38.38 |
| CDY05480 | Canola | nucleus | 77.78 | 38.33 |
| VIT_04s0008g06130.t01 | Wine grape | nucleus | 77.78 | 37.7 |
| AT5G25220.1 | Thale cress | nucleus | 77.78 | 37.35 |
| CDX72343 | Canola | nucleus | 71.98 | 37.25 |
| CDX80491 | Canola | nucleus | 77.78 | 36.26 |
| Bra009826.1-P | Field mustard | nucleus | 71.5 | 35.75 |
| Bra020491.1-P | Field mustard | nucleus | 61.84 | 32.57 |
| CDX70374 | Canola | nucleus | 40.58 | 27.81 |
| TraesCS1D01G075700.1 | Wheat | nucleus | 33.33 | 22.55 |
| TraesCS1D01G075600.1 | Wheat | nucleus | 29.47 | 19.93 |
| TraesCS4D01G058000.1 | Wheat | nucleus | 32.37 | 18.51 |
| TraesCS2D01G256400.1 | Wheat | nucleus | 30.92 | 18.44 |
| TraesCS5D01G415900.1 | Wheat | nucleus | 29.95 | 18.29 |
| TraesCS4D01G019600.1 | Wheat | nucleus | 27.54 | 16.76 |
| TraesCS4D01G019900.1 | Wheat | nucleus | 25.12 | 15.95 |
| TraesCS4D01G019800.1 | Wheat | nucleus | 24.64 | 15.84 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | ncoils:Coil | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX2 |
| PFAM:PF03789 | PFAM:PF03791 | PFAM:PF05920 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 |
| PANTHER:PTHR11850:SF142 | SMART:SM00389 | SMART:SM01188 | SMART:SM01256 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS6D01G134800 |
| EnsemblPlants:TraesCS6D01G134800.1 | TIGR:cd00086 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:-:102468004..102472399
Molecular Weight (calculated)
23541.6 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.903
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHYVLLLCS FKEQLQQHVR VHAMEAVMGC WELEQSLQSL TGASPGEGTG ATMSDDEDNQ VDSETNMFDG SDGSDGMGFG PLILTEGERS LIERVRHELK
101: SELKQGYKEK LVDIREEIMR KRRAGKLPGD TAATLKAWWQ AHSKWPYPTE DDKARLVQET GLQLKQINNW FINQRKRNWH SSNTASSSEK TKKKRNVTGN
201: DGTEQSW
101: SELKQGYKEK LVDIREEIMR KRRAGKLPGD TAATLKAWWQ AHSKWPYPTE DDKARLVQET GLQLKQINNW FINQRKRNWH SSNTASSSEK TKKKRNVTGN
201: DGTEQSW
001: MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS
Arabidopsis Description
KNAT5KNAT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V1Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.