Factsheet for Bra023965.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001976.1-P
Bra002657.1-P
Bra005703.1-P
Bra009618.1-P
Bra011317.1-P
Bra018316.1-P
Bra021632.1-P
Bra022796.1-P
Bra023965.1-P
Bra025497.1-P
Bra027006.1-P
Bra028883.1-P
Bra031546.1-P
Bra036636.1-P
Bra040948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32040.1	Bra031546.1-P	AT1G06920.1	15781858
AT4G32040.1	Bra027006.1-P	AT1G62990.1	15781858
AT4G32040.1	Bra036636.1-P	AT1G62990.1	15781858
AT4G32040.1	Bra001976.1-P	AT2G16400.1	15781858
AT4G32040.1	Bra018316.1-P	AT2G30400.1	15781858
AT4G32040.1	Bra021632.1-P	AT2G30400.1	15781858
AT4G32040.1	Bra022796.1-P	AT2G30400.1	15781858
AT4G32040.1	Bra011317.1-P	AT4G32040.1	15781858
AT4G32040.1	Bra023965.1-P	AT4G32040.1	15781858
AT4G32040.1	Bra040948.1-P	AT5G01840.1	15781858
AT4G32040.1	Bra005703.1-P	AT5G02030.1	15781858
AT4G32040.1	Bra009618.1-P	AT5G02030.1	15781858
AT4G32040.1	Bra028883.1-P	AT5G02030.1	15781858
AT4G32040.1	Bra025497.1-P	AT5G41410.1	11701881
AT4G32040.1	Bra025497.1-P	AT5G41410.1	17873098
AT4G32040.1	Bra002657.1-P	AT5G58360.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13472	Canola	nucleus	96.87	97.12
CDX72343	Canola	nucleus	96.61	92.5
Bra011317.1-P	Field mustard	nucleus	84.33	86.36
AT4G32040.1	Thale cress	nucleus	82.77	82.77
TraesCS5B01G454600.1	Wheat	nucleus	35.51	77.27
TraesCS6D01G134800.1	Wheat	nucleus	38.38	71.01
OQU84501	Sorghum	nucleus	50.13	62.75
TraesCS6A01G145500.1	Wheat	nucleus	49.35	61.76
TraesCS6B01G173900.1	Wheat	nucleus	48.04	61.74
Zm00001d046568_P001	Maize	nucleus	50.65	61.39
HORVU6Hr1G028610.2	Barley	nucleus	49.09	60.84
Zm00001d053749_P002	Maize	nucleus	50.65	60.81
KXG20488	Sorghum	nucleus	50.65	60.81
Os06t0646600-01	Rice	nucleus	51.17	60.68
Os02t0182800-01	Rice	nucleus	49.35	60.38
TraesCS7D01G501000.1	Wheat	nucleus	48.56	60.19
TraesCS1B01G135600.1	Wheat	nucleus	44.13	60.14
Bra036636.1-P	Field mustard	nucleus	45.43	59.18
Zm00001d015549_P001	Maize	nucleus	50.13	59.08
Bra006085.1-P	Field mustard	nucleus	58.75	58.29
Bra027006.1-P	Field mustard	nucleus	44.65	57.97
Bra028554.1-P	Field mustard	nucleus	57.44	56.85
TraesCS7B01G423100.2	Wheat	nucleus	48.04	54.93
HORVU7Hr1G114650.2	Barley	nucleus	46.21	54.8
Bra009826.1-P	Field mustard	nucleus	56.92	52.66
Bra020491.1-P	Field mustard	nucleus	50.91	49.62
TraesCS7A01G511800.2	Wheat	nucleus	48.3	46.25
Bra016348.1-P	Field mustard	nucleus	21.67	26.43
Bra007920.1-P	Field mustard	nucleus	21.41	25.08
Bra024591.1-P	Field mustard	nucleus	21.15	24.7
Bra000638.1-P	Field mustard	nucleus	23.5	23.26
Bra027050.1-P	Field mustard	nucleus	20.63	20.68
Bra024592.1-P	Field mustard	nucleus	9.14	16.51
Bra024593.1-P	Field mustard	nucleus	8.62	15.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EnsemblPlantsGene:Bra023965	EnsemblPlants:Bra023965.1	EnsemblPlants:Bra023965.1-P	InterPro:ELK_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M4E5B1	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF95
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI0002540FE5
SEG:seg	:	:	:	:	:

Description

AT4G32040 (E=2e-162) KNAT5 | KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription activator/ transcription factor

Coordinates

chrA03:+:28556199..28557784

Molecular Weight (calculated)

43285.9 Da

IEP (calculated)

5.835

GRAVY (calculated)

-0.643

Length

383 amino acids

Sequence
(BLAST)

001: MSFNSSHLLP PQEDLPLRHF SSDQSHQPSL LTASFLNLPP TTATTDSKFT HPHRDGDSSA AATNRRWLSF HTEVQNTGEG DPEEVNADGV EDWRSASDKA
101: AILKHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSSLGV GMDNKELDHF MSHYVVVLCS FKEQLQHHVC VHALEAITAC WEIEQSLQSI
201: TGVSPSESNG KTMSDDDEDD NQVEESEVNM FDGSLDGSDC MMGFGPLVPT ERERSLVERV KKELKHELKQ GFKEKIVDIR EEIMRKRRAG KLPGDTTSVL
301: KEWWRTHSKW PYPTEEDKAR LVEETGLQLK QINNWFINQR KRNWNSSSST SSTLSKSKRD ILVNQRMMLA SPDMKDMVSP SVM

Best Arabidopsis Sequence Match ( AT4G32040.1 )
(BLAST)

001: MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS

Arabidopsis Description

KNAT5KNAT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V1Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.