Factsheet for Bra006085.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra009826.1-P
Bra011403.1-P
Bra018316.1-P
Bra021632.1-P
Bra022796.1-P
Bra025497.1-P
Bra027006.1-P
Bra031546.1-P
Bra036636.1-P
Bra037031.1-P
Bra040948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11060.1	Bra031546.1-P	AT1G06920.1	15781858
AT5G11060.1	Bra027006.1-P	AT1G62990.1	15781858
AT5G11060.1	Bra036636.1-P	AT1G62990.1	15781858
AT5G11060.1	Bra018316.1-P	AT2G30400.1	15781858
AT5G11060.1	Bra021632.1-P	AT2G30400.1	15781858
AT5G11060.1	Bra022796.1-P	AT2G30400.1	15781858
AT5G11060.1	Bra000638.1-P	AT4G08150.1	15781858
AT5G11060.1	Bra011403.1-P	AT4G32980.1	15781858
AT5G11060.1	Bra037031.1-P	AT4G32980.1	15781858
AT5G11060.1	Bra040948.1-P	AT5G01840.1	15781858
AT5G11060.1	Bra009826.1-P	AT5G25220.1	15781858
AT5G11060.1	Bra025497.1-P	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78407	Canola	nucleus	99.48	99.48
AT5G11060.1	Thale cress	nucleus	93.26	91.6
Bra028554.1-P	Field mustard	nucleus	90.41	90.18
TraesCS5B01G454600.1	Wheat	nucleus	38.08	83.52
TraesCS6D01G134800.1	Wheat	nucleus	40.67	75.85
Bra009826.1-P	Field mustard	nucleus	80.31	74.88
Bra020491.1-P	Field mustard	nucleus	72.54	71.25
Solyc08g041820.2.1	Tomato	nucleus	63.73	70.49
PGSC0003DMT400040351	Potato	nucleus	64.51	68.22
OQU84501	Sorghum	nucleus	53.37	67.32
TraesCS1B01G135600.1	Wheat	nucleus	48.96	67.26
Zm00001d046568_P001	Maize	nucleus	54.92	67.09
TraesCS6B01G173900.1	Wheat	nucleus	51.55	66.78
Os02t0182800-01	Rice	nucleus	54.15	66.77
KXG20488	Sorghum	nucleus	55.18	66.77
TraesCS6A01G145500.1	Wheat	nucleus	52.85	66.67
TraesCS7D01G501000.1	Wheat	nucleus	53.11	66.34
Os06t0646600-01	Rice	nucleus	55.18	65.94
HORVU6Hr1G028610.2	Barley	nucleus	52.33	65.37
Zm00001d053749_P002	Maize	nucleus	53.11	64.26
KRH05245	Soybean	nucleus	68.39	64.23
Zm00001d015549_P001	Maize	nucleus	53.37	63.38
TraesCS7B01G423100.2	Wheat	nucleus	53.37	61.49
Bra011317.1-P	Field mustard	nucleus	59.33	61.23
Bra036636.1-P	Field mustard	nucleus	46.37	60.88
HORVU7Hr1G114650.2	Barley	nucleus	50.78	60.68
Bra027006.1-P	Field mustard	nucleus	46.37	60.68
Bra023965.1-P	Field mustard	nucleus	58.29	58.75
TraesCS7A01G511800.2	Wheat	nucleus	53.11	51.25
Bra016348.1-P	Field mustard	nucleus	23.06	28.34
Bra024591.1-P	Field mustard	nucleus	22.54	26.52
Bra007920.1-P	Field mustard	nucleus	21.76	25.69
Bra000638.1-P	Field mustard	nucleus	23.58	23.51
Bra027050.1-P	Field mustard	nucleus	21.24	21.47
Bra024592.1-P	Field mustard	nucleus	11.14	20.28
Bra024593.1-P	Field mustard	nucleus	10.62	19.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EnsemblPlantsGene:Bra006085	EnsemblPlants:Bra006085.1	EnsemblPlants:Bra006085.1-P	InterPro:ELK_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1
InterPro:KNOX2	UniProt:M4CPE7	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000253F8FF	SEG:seg	:

Description

AT5G11060 (E=9e-176) KNAT4 | KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription activator/ transcription factor

Coordinates

chrA03:+:1921937..1924378

Molecular Weight (calculated)

43169.1 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.779

Length

386 amino acids

Sequence
(BLAST)

001: MAFHHNHFNH FTDQQHQPPL PPPPQQQEHH FHESTPPNWL LRSDNNFLNL HTPASAAATS SDSPSPAAAN QWLSRSSSFL QRGGGGANNN NVGSGDAMEN
101: VAGGEESMIG ENARHKAEIL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSTLDAASQ GLISGDDKEL DHFMSHYVLL LCSFKEQLQQ
201: HVRVHAMEAV MACWEIEQSL QSFTGVSPGE GTGATMSEDE DEQVESDAHL FDGSLDGLGF GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL
301: RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTAS KNKRRSNAGE NSGRER

Best Arabidopsis Sequence Match ( AT5G11060.1 )
(BLAST)

001: MAFHNNHFNH FTDQQQHQPP PPPQQQQQQH FQESAPPNWL LRSDNNFLNL HTAASAAATS SDSPSSAAAN QWLSRSSSFL QRGNTANNNN NETSGDVIED
101: VPGGEESMIG EKKEAERWQN ARHKAEILSH PLYEQLLSAH VACLRIATPV DQLPRIDAQL AQSQNVVAKY STLEAAQGLL AGDDKELDHF MTHYVLLLCS
201: FKEQLQQHVR VHAMEAVMAC WEIEQSLQSF TGVSPGEGTG ATMSEDEDEQ VESDAHLFDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV
301: DIREEILRKR RAGKLPGDTT SVLKSWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTVSKNK RRSNAGENSG RDR

Arabidopsis Description

KNAT4KNAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UC59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.