CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68906
CDX68925
CDX68927
CDX72383
CDX75307
CDX75313
CDX80491
CDX83145
CDX84837
CDX88165
CDX93852
CDX97830
CDY02063
CDY04827
CDY06241
CDY09945
CDY10735
CDY13511
CDY29674
CDY34012
CDY44476
CDY45383
CDY45968
CDY62219
CDY64892
CDY66559
CDY67505
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11060.1	CDY06241	AT1G06920.1	15781858
AT5G11060.1	CDY09945	AT1G06920.1	15781858
AT5G11060.1	CDY67505	AT1G06920.1	15781858
AT5G11060.1	CDX93852	AT1G62990.1	15781858
AT5G11060.1	CDY45968	AT1G62990.1	15781858
AT5G11060.1	CDY64892	AT1G62990.1	15781858
AT5G11060.1	CDY66559	AT1G62990.1	15781858
AT5G11060.1	CDX84837	AT2G30400.1	15781858
AT5G11060.1	CDX97830	AT2G30400.1	15781858
AT5G11060.1	CDY02063	AT2G30400.1	15781858
AT5G11060.1	CDY10735	AT2G30400.1	15781858
AT5G11060.1	CDY29674	AT2G30400.1	15781858
AT5G11060.1	CDY62219	AT2G30400.1	15781858
AT5G11060.1	CDX83145	AT4G08150.1	15781858
AT5G11060.1	CDY34012	AT4G08150.1	15781858
AT5G11060.1	CDY68624	AT4G08150.1	15781858
AT5G11060.1	CDX68906	AT4G32980.1	15781858
AT5G11060.1	CDX68925	AT4G32980.1	15781858
AT5G11060.1	CDX68927	AT4G32980.1	15781858
AT5G11060.1	CDX72383	AT4G32980.1	15781858
AT5G11060.1	CDX75307	AT4G32980.1	15781858
AT5G11060.1	CDX75313	AT4G32980.1	15781858
AT5G11060.1	CDY13511	AT4G32980.1	15781858
AT5G11060.1	CDY04827	AT5G01840.1	15781858
AT5G11060.1	CDX80491	AT5G25220.1	15781858
AT5G11060.1	CDX88165	AT5G25220.1	15781858
AT5G11060.1	CDY44476	AT5G41410.1	11701881
AT5G11060.1	CDY45383	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006085.1-P	Field mustard	nucleus	99.48	99.48
CDX70374	Canola	nucleus	73.32	93.71
CDX85732	Canola	nucleus	93.52	91.86
AT5G11060.1	Thale cress	nucleus	93.26	91.6
CDY51104	Canola	nucleus	92.75	91.09
CDX88165	Canola	nucleus	66.06	85.28
TraesCS5B01G454600.1	Wheat	nucleus	38.08	83.52
CDY05371	Canola	nucleus	82.64	78.96
CDY05480	Canola	nucleus	83.42	76.67
TraesCS6D01G134800.1	Wheat	nucleus	40.67	75.85
Solyc08g041820.2.1	Tomato	nucleus	63.73	70.49
PGSC0003DMT400040351	Potato	nucleus	64.51	68.22
OQU84501	Sorghum	nucleus	53.37	67.32
TraesCS1B01G135600.1	Wheat	nucleus	48.96	67.26
Zm00001d046568_P001	Maize	nucleus	54.92	67.09
TraesCS6B01G173900.1	Wheat	nucleus	51.55	66.78
Os02t0182800-01	Rice	nucleus	54.15	66.77
KXG20488	Sorghum	nucleus	55.18	66.77
TraesCS6A01G145500.1	Wheat	nucleus	52.85	66.67
TraesCS7D01G501000.1	Wheat	nucleus	53.11	66.34
Os06t0646600-01	Rice	nucleus	55.18	65.94
HORVU6Hr1G028610.2	Barley	nucleus	52.33	65.37
Zm00001d053749_P002	Maize	nucleus	53.11	64.26
KRH05245	Soybean	nucleus	68.39	64.23
Zm00001d015549_P001	Maize	nucleus	53.37	63.38
CDX93852	Canola	nucleus	36.27	63.06
TraesCS7B01G423100.2	Wheat	nucleus	53.37	61.49
CDX80491	Canola	nucleus	70.73	61.49
CDX68812	Canola	nucleus	59.33	61.23
CDY66559	Canola	nucleus	46.37	60.88
CDY45968	Canola	nucleus	46.11	60.75
CDX75215	Canola	nucleus	58.81	60.7
HORVU7Hr1G114650.2	Barley	nucleus	50.78	60.68
CDY64892	Canola	nucleus	46.11	60.54
CDY13472	Canola	nucleus	58.29	58.9
CDX72343	Canola	nucleus	57.51	55.5
TraesCS7A01G511800.2	Wheat	nucleus	53.11	51.25
CDY41449	Canola	nucleus	12.44	39.67
CDY34012	Canola	nucleus	14.51	29.02
CDX91713	Canola	nucleus	23.32	28.66
CDY03742	Canola	nucleus	22.02	25.99
CDY09448	Canola	nucleus	21.76	25.69
CDY69524	Canola	nucleus	12.95	24.51
CDY70923	Canola	nucleus	12.44	23.41
CDX83145	Canola	nucleus	23.58	22.64
CDY19545	Canola	nucleus	21.24	21.41
CDY12943	Canola	nucleus	21.24	21.41
CDY41448	Canola	nucleus	11.14	20.67
CDY68624	Canola	nucleus	17.62	19.48
CDY04722	Canola	nucleus	11.14	19.46
CDY44142	Canola	nucleus	11.4	18.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078CNR2	EnsemblPlants:CDX78407	ProteinID:CDX78407	ProteinID:CDX78407.1
InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00129789001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791
PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389
SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI0004EDC5B7	SEG:seg

Description

BnaA03g03190DHomeobox protein knotted-1-like 4 [Source:Projected from Arabidopsis thaliana (AT5G11060) UniProtKB/Swiss-Prot;Acc:P48001]

Coordinates

chrLK031815:+:647720..650527

Molecular Weight (calculated)

43150.1 Da

IEP (calculated)

6.380

GRAVY (calculated)

-0.778

Length

386 amino acids

Sequence
(BLAST)

001: MAFHHNHFNH FTDQQHQPPL PPPPQQQEHH FHESTPPNWL LRSDNNFLNL HTPASAAATS SDSPSSAAAN QWLSRSSSFL QRGGGGANNN NVGSGDAMEN
101: VAGGEESMIG ENARQKAEIL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSTLDAASQ GLISGDDKEL DHFMSHYVLL LCSFKEQLQQ
201: HVRVHAMEAV MACWEIEQSL QSFTGVSPGE GTGATMSEDE DEQVESDAHL FDGSLDGLGF GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL
301: RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTAS KNKRRSNAGE NSGRER

Best Arabidopsis Sequence Match ( AT5G11060.1 )
(BLAST)

001: MAFHNNHFNH FTDQQQHQPP PPPQQQQQQH FQESAPPNWL LRSDNNFLNL HTAASAAATS SDSPSSAAAN QWLSRSSSFL QRGNTANNNN NETSGDVIED
101: VPGGEESMIG EKKEAERWQN ARHKAEILSH PLYEQLLSAH VACLRIATPV DQLPRIDAQL AQSQNVVAKY STLEAAQGLL AGDDKELDHF MTHYVLLLCS
201: FKEQLQQHVR VHAMEAVMAC WEIEQSLQSF TGVSPGEGTG ATMSEDEDEQ VESDAHLFDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV
301: DIREEILRKR RAGKLPGDTT SVLKSWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTVSKNK RRSNAGENSG RDR

Arabidopsis Description

KNAT4KNAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UC59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.