Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03742 | Canola | nucleus | 97.86 | 97.86 |
| AT1G70510.2 | Thale cress | nucleus | 81.04 | 84.39 |
| CDY41449 | Canola | nucleus | 30.28 | 81.82 |
| CDX91713 | Canola | nucleus | 71.25 | 74.2 |
| KRG99390 | Soybean | nucleus | 29.05 | 72.52 |
| CDY04722 | Canola | nucleus | 44.95 | 66.52 |
| CDY41448 | Canola | nucleus | 42.2 | 66.35 |
| KRH74562 | Soybean | nucleus | 62.39 | 66.02 |
| KRH69600 | Soybean | nucleus | 61.77 | 65.58 |
| VIT_01s0127g00210.t01 | Wine grape | nucleus | 63.3 | 65.09 |
| KRH45633 | Soybean | nucleus | 63.3 | 64.49 |
| CDY44142 | Canola | nucleus | 45.26 | 62.98 |
| CDY69524 | Canola | nucleus | 38.84 | 62.25 |
| CDY70923 | Canola | nucleus | 38.23 | 60.98 |
| Solyc05g005090.2.1 | Tomato | nucleus | 56.57 | 57.81 |
| PGSC0003DMT400035095 | Potato | nucleus | 57.8 | 54.94 |
| KRG99387 | Soybean | nucleus | 31.8 | 54.17 |
| CDY34012 | Canola | nucleus | 27.83 | 47.15 |
| CDY19545 | Canola | nucleus | 39.45 | 33.68 |
| CDY12943 | Canola | nucleus | 39.45 | 33.68 |
| CDX83145 | Canola | nucleus | 40.67 | 33.08 |
| CDY68624 | Canola | nucleus | 30.58 | 28.65 |
| CDY45968 | Canola | nucleus | 25.08 | 27.99 |
| CDX93852 | Canola | nucleus | 18.96 | 27.93 |
| CDY64892 | Canola | nucleus | 25.08 | 27.89 |
| CDY66559 | Canola | nucleus | 25.08 | 27.89 |
| CDX88165 | Canola | nucleus | 25.08 | 27.42 |
| CDY51104 | Canola | nucleus | 26.3 | 21.88 |
| CDX78407 | Canola | nucleus | 25.69 | 21.76 |
| CDX85732 | Canola | nucleus | 25.99 | 21.63 |
| CDY05371 | Canola | nucleus | 26.61 | 21.53 |
| CDY13472 | Canola | nucleus | 24.77 | 21.2 |
| CDX70374 | Canola | nucleus | 19.57 | 21.19 |
| CDX68812 | Canola | nucleus | 24.16 | 21.12 |
| CDX75215 | Canola | nucleus | 23.85 | 20.86 |
| CDY05480 | Canola | nucleus | 26.3 | 20.48 |
| CDX72343 | Canola | nucleus | 24.77 | 20.25 |
| CDX80491 | Canola | nucleus | 25.38 | 18.69 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | GO:A0A078FBX0 | UniProt:A0A078FBX0 | EnsemblPlants:CDY09448 | ProteinID:CDY09448 |
| ProteinID:CDY09448.1 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00030952001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 |
| InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF99 | SMART:SM00389 |
| SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI0004EF160D | SEG:seg |
Description
BnaC02g19900DBnaC02g19900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBX0]
Coordinates
chrLK031996:+:78891..84803
Molecular Weight (calculated)
36898.1 Da
IEP (calculated)
4.651
GRAVY (calculated)
-0.624
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRMCGFRSA GDYSEKAELM MSSSESLMSL SDYHNLICSS AGENHVFGSN ELYSAAASAL SSEVSIAPPA RRADQDNPSL GVIKSKIASH PLYPRLLQTY
101: IDCQKVGAPL EIAYVLEEIQ GENDVYKRDV APLSCFGADP ELDEFMETYC DILVKYKSDL ARPFDEATTF LNKIETQLQD LCTGPASARG LSVSDDGAVS
201: SDEELREGDD VATQDSQQRS NDRELKDQLL RKFGSHISSL KLEFSKKKKK GKLPREARQA LLDWWNVHYK WPYPTEADKI ALAEETGLDQ KQINNWFINQ
301: RKRHWKPSQN MPFAMMDDSS ETFFTEE
101: IDCQKVGAPL EIAYVLEEIQ GENDVYKRDV APLSCFGADP ELDEFMETYC DILVKYKSDL ARPFDEATTF LNKIETQLQD LCTGPASARG LSVSDDGAVS
201: SDEELREGDD VATQDSQQRS NDRELKDQLL RKFGSHISSL KLEFSKKKKK GKLPREARQA LLDWWNVHYK WPYPTEADKI ALAEETGLDQ KQINNWFINQ
301: RKRHWKPSQN MPFAMMDDSS ETFFTEE
001: MDRMCGFRST EDYSEKATLM MPSDYQSLIC STTGDNQRLF GSDELATALS SELLPRIRKA EDNFSLSVIK SKIASHPLYP RLLQTYIDCQ KVGAPMEIAC
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
Arabidopsis Description
KNAT2KNOTTED-like from Arabidopsis thaliana 2 [Source:TAIR;Acc:AT1G70510]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.