CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51104	Canola	nucleus	98.73	98.73
Bra028554.1-P	Field mustard	nucleus	96.95	98.45
CDX78407	Canola	nucleus	91.86	93.52
CDX70374	Canola	nucleus	68.19	88.74
CDX88165	Canola	nucleus	65.14	85.62
TraesCS5B01G454600.1	Wheat	nucleus	37.4	83.52
CDY05371	Canola	nucleus	80.92	78.71
CDY05480	Canola	nucleus	81.93	76.67
TraesCS6D01G134800.1	Wheat	nucleus	39.95	75.85
TraesCS1B01G135600.1	Wheat	nucleus	48.35	67.62
Zm00001d046568_P001	Maize	nucleus	53.69	66.77
TraesCS7D01G501000.1	Wheat	nucleus	52.42	66.67
OQU84501	Sorghum	nucleus	51.91	66.67
KXG20488	Sorghum	nucleus	53.94	66.46
Os02t0182800-01	Rice	nucleus	52.67	66.13
TraesCS6B01G173900.1	Wheat	nucleus	50.13	66.11
TraesCS6A01G145500.1	Wheat	nucleus	51.4	66.01
Os06t0646600-01	Rice	nucleus	53.94	65.63
HORVU6Hr1G028610.2	Barley	nucleus	50.89	64.72
Zm00001d053749_P002	Maize	nucleus	51.4	63.32
CDX93852	Canola	nucleus	35.62	63.06
CDX80491	Canola	nucleus	71.25	63.06
Zm00001d015549_P001	Maize	nucleus	51.91	62.77
TraesCS7B01G423100.2	Wheat	nucleus	52.67	61.79
CDX68812	Canola	nucleus	58.02	60.96
CDX75215	Canola	nucleus	58.02	60.96
CDY66559	Canola	nucleus	45.55	60.88
CDY45968	Canola	nucleus	45.29	60.75
CDY64892	Canola	nucleus	45.29	60.54
HORVU7Hr1G114650.2	Barley	nucleus	49.62	60.37
CDY13472	Canola	nucleus	56.23	57.85
CDX72343	Canola	nucleus	55.47	54.5
TraesCS7A01G511800.2	Wheat	nucleus	52.42	51.5
CDY41449	Canola	nucleus	12.21	39.67
CDY34012	Canola	nucleus	14.76	30.05
CDX91713	Canola	nucleus	22.39	28.03
CDY03742	Canola	nucleus	21.88	26.3
CDY09448	Canola	nucleus	21.63	25.99
CDY69524	Canola	nucleus	12.72	24.51
CDY70923	Canola	nucleus	12.21	23.41
CDX83145	Canola	nucleus	23.16	22.64
CDY19545	Canola	nucleus	20.61	21.15
CDY12943	Canola	nucleus	20.61	21.15
CDY41448	Canola	nucleus	10.43	19.71
CDY68624	Canola	nucleus	17.05	19.2
CDY04722	Canola	nucleus	10.69	19.0
CDY44142	Canola	nucleus	10.94	18.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078D9I6	EnsemblPlants:CDX85732	ProteinID:CDX85732	ProteinID:CDX85732.1
InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00143482001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789
PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI0004EF1268	SEG:seg	:	:	:	:

Description

BnaA02g00810D

Coordinates

chrLK031842:-:1467914..1470720

Molecular Weight (calculated)

44284.4 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.809

Length

393 amino acids

Sequence
(BLAST)

001: MAFHNNHFNH FIDQQHQPPP PSQQQQEHHF HESTPPNWLL RSDNNFLNLQ TAASAAATSS DSPSSAAANQ WLSRSTSFLQ RGGGANNNNV GSGDVIDDVT
101: TGGEESMIGE RKEAERWQNA RHKSEILSHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS TMDAAAQGLI SGDEKELDHF MTHYVLLLCS
201: FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSEDEDEQ VESDAHLYDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV
301: DIREEILRKR RAGKLPGDTT SVLKAWWQSH SKWPYPTEED KVRLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTVPKNK RRSNAGENSG RER

Best Arabidopsis Sequence Match ( AT5G11060.1 )
(BLAST)

001: MAFHNNHFNH FTDQQQHQPP PPPQQQQQQH FQESAPPNWL LRSDNNFLNL HTAASAAATS SDSPSSAAAN QWLSRSSSFL QRGNTANNNN NETSGDVIED
101: VPGGEESMIG EKKEAERWQN ARHKAEILSH PLYEQLLSAH VACLRIATPV DQLPRIDAQL AQSQNVVAKY STLEAAQGLL AGDDKELDHF MTHYVLLLCS
201: FKEQLQQHVR VHAMEAVMAC WEIEQSLQSF TGVSPGEGTG ATMSEDEDEQ VESDAHLFDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV
301: DIREEILRKR RAGKLPGDTT SVLKSWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTVSKNK RRSNAGENSG RDR

Arabidopsis Description

KNAT4KNAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UC59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.