Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016348.1-P | Field mustard | nucleus | 98.73 | 98.73 |
| CDY41449 | Canola | nucleus | 37.9 | 98.35 |
| CDY41448 | Canola | nucleus | 62.1 | 93.75 |
| AT1G23380.2 | Thale cress | nucleus | 85.67 | 81.76 |
| CDY04722 | Canola | nucleus | 56.05 | 79.64 |
| CDY44142 | Canola | nucleus | 57.32 | 76.6 |
| CDY09448 | Canola | nucleus | 74.2 | 71.25 |
| CDY03742 | Canola | nucleus | 73.57 | 70.64 |
| KRG99390 | Soybean | nucleus | 28.03 | 67.18 |
| KRH74562 | Soybean | nucleus | 64.01 | 65.05 |
| KRH69600 | Soybean | nucleus | 63.38 | 64.61 |
| VIT_01s0127g00210.t01 | Wine grape | nucleus | 65.29 | 64.47 |
| KRH45633 | Soybean | nucleus | 64.65 | 63.24 |
| CDY69524 | Canola | nucleus | 40.76 | 62.75 |
| CDY70923 | Canola | nucleus | 40.13 | 61.46 |
| KRG99387 | Soybean | nucleus | 33.76 | 55.21 |
| Solyc05g005090.2.1 | Tomato | nucleus | 54.78 | 53.75 |
| PGSC0003DMT400035095 | Potato | nucleus | 57.32 | 52.33 |
| CDY34012 | Canola | nucleus | 28.03 | 45.6 |
| CDY12943 | Canola | nucleus | 41.08 | 33.68 |
| CDY19545 | Canola | nucleus | 41.08 | 33.68 |
| CDX83145 | Canola | nucleus | 42.99 | 33.58 |
| CDY68624 | Canola | nucleus | 33.76 | 30.37 |
| CDX88165 | Canola | nucleus | 26.75 | 28.09 |
| CDY64892 | Canola | nucleus | 25.8 | 27.55 |
| CDY66559 | Canola | nucleus | 25.8 | 27.55 |
| CDX93852 | Canola | nucleus | 19.43 | 27.48 |
| CDY45968 | Canola | nucleus | 25.48 | 27.3 |
| CDX78407 | Canola | nucleus | 28.66 | 23.32 |
| CDY05371 | Canola | nucleus | 29.62 | 23.02 |
| CDX68812 | Canola | nucleus | 27.39 | 22.99 |
| CDX75215 | Canola | nucleus | 27.07 | 22.73 |
| CDY51104 | Canola | nucleus | 28.34 | 22.65 |
| CDX85732 | Canola | nucleus | 28.03 | 22.39 |
| CDX70374 | Canola | nucleus | 21.34 | 22.19 |
| CDY13472 | Canola | nucleus | 26.75 | 21.99 |
| CDY05480 | Canola | nucleus | 29.3 | 21.9 |
| CDX72343 | Canola | nucleus | 26.75 | 21.0 |
| CDX80491 | Canola | nucleus | 27.07 | 19.14 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | GO:A0A078DWW1 | EnsemblPlants:CDX91713 | ProteinID:CDX91713 | ProteinID:CDX91713.1 |
| InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00153204001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 |
| PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 |
| PANTHER:PTHR11850:SF99 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 |
| UniParc:UPI0004EE13B9 | SEG:seg | : | : | : | : |
Description
BnaC08g06320D
Coordinates
chrLK031869:-:360519..366496
Molecular Weight (calculated)
35234.6 Da
IEP (calculated)
5.012
GRAVY (calculated)
-0.564
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMYGFHPT CDYSDKPVMM MSQDNMMFPS DYQTLLCSSA GDNRVSDVFG SNELLSVAAS AMSSEAASMG PEIRTNNGNV SLGVIKAKIA CHPSYPRLLQ
101: AYMDCQKVGA PPDIAYLLEE IQRESHVYKQ GVAPSSSCFG ADPELDEFME TYCEILVKYK SDLARPFDEA TTFLNKIEMQ LRNLCTGVES ARGLSEDGAV
201: SSDEELSGGD EISQDGKQIR EDRDLKDRLL RKFGSGISSL KLEFSKKKKK GKLPREARQA LLDWWSVHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWNQSEN MPFA
101: AYMDCQKVGA PPDIAYLLEE IQRESHVYKQ GVAPSSSCFG ADPELDEFME TYCEILVKYK SDLARPFDEA TTFLNKIEMQ LRNLCTGVES ARGLSEDGAV
201: SSDEELSGGD EISQDGKQIR EDRDLKDRLL RKFGSGISSL KLEFSKKKKK GKLPREARQA LLDWWSVHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWNQSEN MPFA
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.