Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78407 | Canola | nucleus | 93.71 | 73.32 |
| CDX85732 | Canola | nucleus | 88.74 | 68.19 |
| CDY51104 | Canola | nucleus | 88.08 | 67.68 |
| CDY05371 | Canola | nucleus | 74.83 | 55.94 |
| CDX88165 | Canola | nucleus | 55.3 | 55.85 |
| CDY05480 | Canola | nucleus | 75.83 | 54.52 |
| Zm00001d046568_P001 | Maize | nucleus | 45.36 | 43.35 |
| KXG20488 | Sorghum | nucleus | 45.7 | 43.26 |
| Os06t0646600-01 | Rice | nucleus | 46.03 | 43.03 |
| TraesCS6A01G145500.1 | Wheat | nucleus | 43.38 | 42.81 |
| TraesCS7D01G501000.1 | Wheat | nucleus | 43.71 | 42.72 |
| TraesCS6B01G173900.1 | Wheat | nucleus | 42.05 | 42.62 |
| Os02t0182800-01 | Rice | nucleus | 44.04 | 42.49 |
| OQU84501 | Sorghum | nucleus | 42.72 | 42.16 |
| HORVU6Hr1G028610.2 | Barley | nucleus | 43.05 | 42.07 |
| TraesCS5B01G454600.1 | Wheat | nucleus | 24.5 | 42.05 |
| CDX80491 | Canola | nucleus | 61.59 | 41.89 |
| TraesCS1B01G135600.1 | Wheat | nucleus | 38.41 | 41.28 |
| CDX68812 | Canola | nucleus | 50.66 | 40.91 |
| Zm00001d053749_P002 | Maize | nucleus | 43.05 | 40.75 |
| CDX75215 | Canola | nucleus | 50.33 | 40.64 |
| TraesCS6D01G134800.1 | Wheat | nucleus | 27.81 | 40.58 |
| VIT_04s0008g06130.t01 | Wine grape | nucleus | 57.28 | 40.52 |
| TraesCS7B01G423100.2 | Wheat | nucleus | 44.04 | 39.7 |
| Zm00001d015549_P001 | Maize | nucleus | 42.72 | 39.69 |
| CDY13472 | Canola | nucleus | 49.34 | 39.01 |
| HORVU7Hr1G114650.2 | Barley | nucleus | 40.73 | 38.08 |
| CDY45968 | Canola | nucleus | 36.76 | 37.88 |
| CDY64892 | Canola | nucleus | 36.76 | 37.76 |
| CDY66559 | Canola | nucleus | 36.76 | 37.76 |
| CDX72343 | Canola | nucleus | 48.34 | 36.5 |
| CDX93852 | Canola | nucleus | 24.83 | 33.78 |
| TraesCS7A01G511800.2 | Wheat | nucleus | 43.71 | 33.0 |
| CDY41449 | Canola | nucleus | 9.93 | 24.79 |
| CDX91713 | Canola | nucleus | 22.19 | 21.34 |
| CDY34012 | Canola | nucleus | 13.58 | 21.24 |
| CDY03742 | Canola | nucleus | 21.52 | 19.88 |
| CDY09448 | Canola | nucleus | 21.19 | 19.57 |
| CDY41448 | Canola | nucleus | 12.58 | 18.27 |
| CDY04722 | Canola | nucleus | 12.58 | 17.19 |
| CDX83145 | Canola | nucleus | 22.85 | 17.16 |
| CDY69524 | Canola | nucleus | 11.26 | 16.67 |
| CDY44142 | Canola | nucleus | 12.91 | 16.6 |
| CDY12943 | Canola | nucleus | 20.86 | 16.45 |
| CDY19545 | Canola | nucleus | 20.86 | 16.45 |
| CDY70923 | Canola | nucleus | 10.6 | 15.61 |
| CDY68624 | Canola | nucleus | 15.23 | 13.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | GO:A0A078C298 | EnsemblPlants:CDX70374 | ProteinID:CDX70374 | ProteinID:CDX70374.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00140166001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| PFscan:PS50071 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF95 | SMART:SM00389 | SMART:SM01255 | SMART:SM01256 |
| SUPFAM:SSF46689 | UniParc:UPI0004EF263B | SEG:seg | : | : | : |
Description
BnaC03g04580D
Coordinates
chrLK031791:-:101427..104054
Molecular Weight (calculated)
33776.1 Da
IEP (calculated)
6.798
GRAVY (calculated)
-0.717
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFHNNHFNH FTDQQHQPPL PPPPQQQEHH FHESTPPNWL LRSDNNFLNL HTPASAAATS SDSPSSAAAN QWLSRSSSFL QRGGGASNNN AGSGDAMENI
101: TGGEESMIGE NARHKAEILS HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK YSTLDAASQG LISGDEKELD HFMSHYVLLL CSFKEQLQQH
201: VRVHAMEAVM ACWEIEQSLQ SFTAIGSFHA QLQTDFISHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTASKNKR RSNAGENSGR
301: ER
101: TGGEESMIGE NARHKAEILS HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK YSTLDAASQG LISGDEKELD HFMSHYVLLL CSFKEQLQQH
201: VRVHAMEAVM ACWEIEQSLQ SFTAIGSFHA QLQTDFISHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTASKNKR RSNAGENSGR
301: ER
001: MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS
Arabidopsis Description
KNAT5KNAT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V1Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.