CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX71279
CDX72343
CDX75215
CDX80798
CDX84837
CDX93852
CDX97830
CDY02063
CDY02814
CDY04827
CDY06241
CDY09945
CDY10473
CDY10735
CDY13472
CDY29674
CDY32706
CDY32990
CDY40327
CDY43860
CDY44476
CDY45383
CDY45968
CDY46209
CDY48107
CDY55113
CDY62219
CDY64892
CDY66559
CDY67505
CDY69132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32040.1	CDY06241	AT1G06920.1	15781858
AT4G32040.1	CDY09945	AT1G06920.1	15781858
AT4G32040.1	CDY67505	AT1G06920.1	15781858
AT4G32040.1	CDX93852	AT1G62990.1	15781858
AT4G32040.1	CDY45968	AT1G62990.1	15781858
AT4G32040.1	CDY64892	AT1G62990.1	15781858
AT4G32040.1	CDY66559	AT1G62990.1	15781858
AT4G32040.1	CDX71279	AT2G16400.1	15781858
AT4G32040.1	CDY46209	AT2G16400.1	15781858
AT4G32040.1	CDX84837	AT2G30400.1	15781858
AT4G32040.1	CDX97830	AT2G30400.1	15781858
AT4G32040.1	CDY02063	AT2G30400.1	15781858
AT4G32040.1	CDY10735	AT2G30400.1	15781858
AT4G32040.1	CDY29674	AT2G30400.1	15781858
AT4G32040.1	CDY62219	AT2G30400.1	15781858
AT4G32040.1	CDX68812	AT4G32040.1	15781858
AT4G32040.1	CDX72343	AT4G32040.1	15781858
AT4G32040.1	CDX75215	AT4G32040.1	15781858
AT4G32040.1	CDY13472	AT4G32040.1	15781858
AT4G32040.1	CDY04827	AT5G01840.1	15781858
AT4G32040.1	CDX80798	AT5G02030.1	15781858
AT4G32040.1	CDY10473	AT5G02030.1	15781858
AT4G32040.1	CDY40327	AT5G02030.1	15781858
AT4G32040.1	CDY48107	AT5G02030.1	15781858
AT4G32040.1	CDY55113	AT5G02030.1	15781858
AT4G32040.1	CDY69132	AT5G02030.1	15781858
AT4G32040.1	CDY44476	AT5G41410.1	11701881
AT4G32040.1	CDY45383	AT5G41410.1	11701881
AT4G32040.1	CDY44476	AT5G41410.1	17873098
AT4G32040.1	CDY45383	AT5G41410.1	17873098
AT4G32040.1	CDY02814	AT5G58360.1	15781858
AT4G32040.1	CDY32706	AT5G58360.1	15781858
AT4G32040.1	CDY32990	AT5G58360.1	15781858
AT4G32040.1	CDY43860	AT5G58360.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011317.1-P	Field mustard	nucleus	97.33	97.33
CDX75215	Canola	nucleus	96.26	96.26
AT4G32040.1	Thale cress	nucleus	88.77	86.68
CDY13472	Canola	nucleus	85.56	83.77
CDX72343	Canola	nucleus	84.49	79.0
TraesCS5B01G454600.1	Wheat	nucleus	36.63	77.84
TraesCS6D01G134800.1	Wheat	nucleus	39.57	71.5
CDX88165	Canola	nucleus	55.08	68.9
OQU84501	Sorghum	nucleus	51.6	63.07
TraesCS6A01G145500.1	Wheat	nucleus	50.8	62.09
TraesCS6B01G173900.1	Wheat	nucleus	49.47	62.08
Zm00001d046568_P001	Maize	nucleus	52.14	61.71
TraesCS7D01G501000.1	Wheat	nucleus	50.53	61.16
HORVU6Hr1G028610.2	Barley	nucleus	50.53	61.16
Zm00001d053749_P002	Maize	nucleus	52.14	61.13
TraesCS1B01G135600.1	Wheat	nucleus	45.72	60.85
KXG20488	Sorghum	nucleus	51.87	60.81
CDX93852	Canola	nucleus	36.1	60.81
Os06t0646600-01	Rice	nucleus	52.14	60.37
Os02t0182800-01	Rice	nucleus	50.27	60.06
Zm00001d015549_P001	Maize	nucleus	51.6	59.38
CDX78407	Canola	nucleus	61.23	59.33
CDX85732	Canola	nucleus	60.96	58.02
CDY66559	Canola	nucleus	45.45	57.82
CDY64892	Canola	nucleus	45.19	57.48
CDY45968	Canola	nucleus	44.92	57.34
CDY51104	Canola	nucleus	60.16	57.25
CDY05371	Canola	nucleus	61.5	56.93
TraesCS7B01G423100.2	Wheat	nucleus	49.73	55.52
HORVU7Hr1G114650.2	Barley	nucleus	47.33	54.8
CDY05480	Canola	nucleus	61.5	54.76
VIT_04s0008g06130.t01	Wine grape	nucleus	59.36	51.99
CDX70374	Canola	nucleus	40.91	50.66
CDX80491	Canola	nucleus	58.02	48.87
TraesCS7A01G511800.2	Wheat	nucleus	49.73	46.5
CDY41449	Canola	nucleus	13.37	41.32
CDY34012	Canola	nucleus	14.44	27.98
CDX91713	Canola	nucleus	22.99	27.39
CDY69524	Canola	nucleus	13.64	25.0
CDY03742	Canola	nucleus	21.66	24.77
CDY09448	Canola	nucleus	21.12	24.16
CDY70923	Canola	nucleus	13.1	23.9
CDX83145	Canola	nucleus	23.8	22.14
CDY19545	Canola	nucleus	20.59	20.1
CDY12943	Canola	nucleus	20.59	20.1
CDY68624	Canola	nucleus	18.18	19.48
CDY41448	Canola	nucleus	9.63	17.31
CDY04722	Canola	nucleus	9.89	16.74
CDY44142	Canola	nucleus	10.43	16.6

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078BWZ9	EnsemblPlants:CDX68812	ProteinID:CDX68812	ProteinID:CDX68812.1
InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00130531001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789
PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI0004EE81B7	SEG:seg	:	:	:	:

Description

BnaC01g06410D

Coordinates

chrLK031789:+:1403061..1405381

Molecular Weight (calculated)

41860.2 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.645

Length

374 amino acids

Sequence
(BLAST)

001: MSFTSSHLLP PQEDLPLRHF SDQSHQQPQP HFSETPSLLT ASFLNLPPAA ATADSDFAPP NRGGDSSSAA ATNRRWLSFD SSEIQNTGEG RPEVIDGVNA
101: ADGGGGDWKN ASCKAAIVRH PMFEQLLAAH VACLRVATPV DQIPRIDAQL GELHTVAAKY STLGVVMDNK ELDHFMSHYV VLLCSFKEQL QHHVCVHAME
201: AITACWEIEQ SLQSITGVSP SENNGKTMSD DEDDNQVESE VNMFDGSLEG SDCMMGFGPL VPTERERSLL ERVKKELKHE LKQGFKEKIV DIREEIMRKR
301: RAGKLPGDTT SVLKEWWRTH AKWPYPTEED KAKLVQETGL QLKQINNWFI NQRKRNWNSS SSTSSTPSKN KRKR

Best Arabidopsis Sequence Match ( AT4G32040.1 )
(BLAST)

001: MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS

Arabidopsis Description

KNAT5KNAT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V1Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.