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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68812
CDX72343
CDX75215
CDX80491
CDX80798
CDX83145
CDX88165
CDY10473
CDY12943
CDY13472
CDY19545
CDY34012
CDY40327
CDY48107
CDY55113
CDY68624
CDY69132

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02030.1 CDY12943 AT1G62360.1 12897247
AT5G02030.1 CDY19545 AT1G62360.1 12897247
AT5G02030.1 CDY12943 AT1G62360.1 15019989
AT5G02030.1 CDY19545 AT1G62360.1 15019989
AT5G02030.1 CDY12943 AT1G62360.1 15781858
AT5G02030.1 CDY19545 AT1G62360.1 15781858
AT5G02030.1 CDY12943 AT1G62360.1 16513846
AT5G02030.1 CDY19545 AT1G62360.1 16513846
AT5G02030.1 CDX83145 AT4G08150.1 12897247
AT5G02030.1 CDY34012 AT4G08150.1 12897247
AT5G02030.1 CDY68624 AT4G08150.1 12897247
AT5G02030.1 CDX83145 AT4G08150.1 15019989
AT5G02030.1 CDY34012 AT4G08150.1 15019989
AT5G02030.1 CDY68624 AT4G08150.1 15019989
AT5G02030.1 CDX83145 AT4G08150.1 15781858
AT5G02030.1 CDY34012 AT4G08150.1 15781858
AT5G02030.1 CDY68624 AT4G08150.1 15781858
AT5G02030.1 CDX68812 AT4G32040.1 15781858
AT5G02030.1 CDX72343 AT4G32040.1 15781858
AT5G02030.1 CDX75215 AT4G32040.1 15781858
AT5G02030.1 CDY13472 AT4G32040.1 15781858
AT5G02030.1 CDX80798 AT5G02030.1 15781858
AT5G02030.1 CDY10473 AT5G02030.1 15781858
AT5G02030.1 CDY40327 AT5G02030.1 15781858
AT5G02030.1 CDY48107 AT5G02030.1 15781858
AT5G02030.1 CDY55113 AT5G02030.1 15781858
AT5G02030.1 CDY69132 AT5G02030.1 15781858
AT5G02030.1 CDX80491 AT5G25220.1 15781858
AT5G02030.1 CDX88165 AT5G25220.1 15781858
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69132 Canola nucleus 97.39 97.56
AT5G02030.1 Thale cress nucleus 86.78 86.78
CDY40327 Canola nucleus 86.61 86.16
CDY10473 Canola nucleus 85.91 85.91
CDY55113 Canola nucleus 77.22 84.89
CDX80798 Canola nucleus 76.52 82.71
Solyc10g086640.1.1 Tomato nucleus 25.04 55.81
GSMUA_Achr10P... Banana nucleus 9.39 52.94
Solyc09g011380.2.1 Tomato nucleus 42.61 48.61
HORVU3Hr1G072010.1 Barley mitochondrion 10.78 48.44
PGSC0003DMT400062353 Potato nucleus 41.74 47.52
KRH00065 Soybean nucleus 45.39 45.55
KRH75724 Soybean nucleus 47.48 44.83
VIT_08s0007g01290.t01 Wine grape nucleus 49.57 44.39
KRH65931 Soybean nucleus 47.13 43.92
GSMUA_Achr10P... Banana plastid 7.3 43.3
CDX83753 Canola nucleus 13.91 42.11
PGSC0003DMT400049235 Potato nucleus 40.52 40.52
GSMUA_Achr7P14960_001 Banana nucleus 29.91 39.09
TraesCS1D01G280300.1 Wheat nucleus 37.22 37.35
TraesCS1B01G290200.1 Wheat nucleus 37.57 37.24
TraesCS1A01G281100.1 Wheat nucleus 37.04 37.11
Os05t0455200-01 Rice nucleus 37.04 36.72
EES18336 Sorghum nucleus 36.17 36.49
Zm00001d038355_P001 Maize nucleus 35.65 35.59
Os01t0848400-01 Rice nucleus 37.57 35.29
Zm00001d042864_P002 Maize nucleus 35.65 34.92
EES03882 Sorghum nucleus 36.0 34.91
CDY21826 Canola extracellular, plastid 5.74 34.38
Zm00001d010060_P001 Maize nucleus 33.91 34.03
TraesCS3B01G396100.1 Wheat nucleus 36.52 33.87
TraesCS3D01G357400.1 Wheat nucleus 36.35 33.55
TraesCS3A01G363900.1 Wheat nucleus 36.35 33.28
GSMUA_Achr5P07020_001 Banana nucleus 30.09 32.95
CDY45383 Canola nucleus 14.61 31.94
CDY29411 Canola nucleus 20.7 30.59
CDX73171 Canola nucleus 15.3 30.45
CDY47523 Canola nucleus 15.3 30.45
CDX75307 Canola nucleus 10.96 28.38
CDX89711 Canola nucleus 22.26 28.13
CDY02261 Canola nucleus 21.91 28.06
HORVU1Hr1G072850.1 Barley nucleus, plastid 37.74 27.33
CDY46209 Canola nucleus 17.74 26.98
CDY52073 Canola nucleus 22.09 26.96
CDY39031 Canola nucleus 22.09 26.57
CDY63699 Canola nucleus 18.96 26.08
CDX68129 Canola nucleus 21.04 25.58
CDY30566 Canola nucleus 19.65 25.22
CDX73170 Canola nucleus 21.91 24.51
CDX77099 Canola nucleus 19.13 24.5
CDX71279 Canola nucleus 16.52 24.48
CDX76849 Canola nucleus 25.39 24.29
CDY39359 Canola nucleus 21.91 24.28
CDY47524 Canola nucleus 21.74 24.22
CDY46061 Canola nucleus 25.39 24.01
CDY44476 Canola nucleus 23.48 23.77
CDX96653 Canola nucleus 20.87 23.72
CDX85896 Canola nucleus 20.52 23.46
CDY32069 Canola nucleus 25.91 23.43
CDY40420 Canola nucleus 25.57 23.26
CDX84171 Canola nucleus 23.48 22.96
CDX75604 Canola nucleus 26.43 22.72
CDY39669 Canola nucleus 25.39 22.64
CDY62523 Canola nucleus 25.39 22.53
CDX69252 Canola nucleus 26.09 22.49
CDX84585 Canola nucleus 26.09 22.35
CDY24765 Canola nucleus 25.39 21.89
CDX79646 Canola nucleus 26.26 21.85
HORVU3Hr1G085720.1 Barley nucleus, plastid 28.17 21.51
CDY22463 Canola nucleus 24.87 21.34
CDX75085 Canola nucleus 23.3 21.34
CDY13511 Canola nucleus 13.74 18.08
CDX75313 Canola nucleus 14.61 18.03
CDX68927 Canola nucleus 14.09 17.57
CDY45321 Canola nucleus, plastid 20.35 17.08
CDX72383 Canola nucleus 13.22 16.81
CDX68925 Canola cytosol 3.48 11.05
CDX68906 Canola nucleus 4.17 9.27
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.5GO:A0A078IDG4UniProt:A0A078IDG4EnsemblPlants:CDY48107ProteinID:CDY48107
ProteinID:CDY48107.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00088804001InterPro:Homeobox-like_sfInterPro:Homeobox_KN_domain
InterPro:Homeobox_domInterPro:IPR001356PFAM:PF05920PFAM:PF07526InterPro:POX_domPFscan:PS50071
PANTHER:PTHR11850PANTHER:PTHR11850:SF82SMART:SM00389SMART:SM00574SUPFAM:SSF46689UniParc:UPI0004EEE626
SEG:seg:::::
Description
BnaC02g03640DBnaC02g03640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDG4]
Coordinates
chrLK032754:-:67511..70999
Molecular Weight (calculated)
61968.1 Da
IEP (calculated)
7.441
GRAVY (calculated)
-0.439
Length
575 amino acids
Sequence
(BLAST)
001: MSDAYEPYHV LQHSRRDKLR MPSLDSHFHF HHPPPPPSSS GGGGVFPIAD SDFLAAGGFH SNNNNNPSYS NFMGFLGGPS SSSSTAVAVA GDHSFNAGLS
101: SGDVLVFKPE PLSLSLSSHP RPTYDLVVPG VVNSGFCRSA AEAAAAAVTV ASRSSGPLGP FTGYASILKG SKFLKPAQML LDDFCSVSRA VYTEQIVDDE
201: DDDSSLLFDP TIDNLCGVSD AGVGENGKKK SMLISMLDEV YKRYKQYYEQ LQAVMGSFEC VAGLGHAAPY ASLTLKVLSK HFKCLKNAIT DQLQFSTNNK
301: IQQQRGHVMN SENKTDFLGF GGSDSSRGLC SAGQRHGFPD HHAPVWRPHR GLPERAVTVL RAWLFDHFLH PYPTDTDKLM LAKQTGLSRN QVSNWFINAR
401: VRVWKPMVEE IHMLETRQSQ KSSSSSWRDT PTVFPDNNNN PSSSTAQQRA NNNSSPARRV RNDDVHATTN TNNNHFMNAG NSGNIGGGGA VSFSYGIASS
501: NVTGMNTSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSSGGGAGG QSYDRPFGRD FIGGSNHQFL HDFVG
Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)
001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG
Arabidopsis Description
BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.