CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39031	Canola	nucleus	97.66	96.23
CDX83753	Canola	nucleus	32.06	79.47
CDX68129	Canola	nucleus	78.98	78.65
CDX73170	Canola	nucleus	83.86	76.85
CDY47524	Canola	nucleus	83.86	76.55
AT1G75410.2	Thale cress	nucleus	83.65	75.19
CDX85896	Canola	nucleus	79.83	74.75
CDY29411	Canola	nucleus	52.65	63.75
CDY63699	Canola	nucleus	53.08	59.81
CDY39359	Canola	nucleus	64.54	58.57
CDX96653	Canola	nucleus	60.93	56.72
CDY21826	Canola	extracellular, plastid	9.77	47.92
CDY02261	Canola	nucleus	38.85	40.76
CDX73171	Canola	nucleus	24.63	40.14
CDX89711	Canola	nucleus	38.64	40.0
CDY47523	Canola	nucleus	24.42	39.79
CDY46209	Canola	nucleus	31.63	39.42
CDX75307	Canola	nucleus	17.62	37.39
KRH51792	Soybean	nucleus	46.5	34.38
CDY45383	Canola	nucleus	19.11	34.22
KRH05875	Soybean	nucleus	43.95	33.88
KRH15136	Soybean	nucleus	45.22	33.49
KRH61114	Soybean	nucleus	45.86	33.44
CDX71279	Canola	nucleus	25.48	30.93
Solyc04g080790.2.1	Tomato	nucleus	43.31	30.86
PGSC0003DMT400009610	Potato	nucleus	43.1	30.71
VIT_18s0001g13150.t01	Wine grape	nucleus	45.01	30.37
CDY40420	Canola	nucleus	34.82	25.95
CDY32069	Canola	nucleus	35.03	25.94
CDY45321	Canola	nucleus, plastid	37.58	25.84
CDX77099	Canola	nucleus	24.63	25.84
CDY30566	Canola	nucleus	24.42	25.67
CDX84171	Canola	nucleus	31.85	25.51
CDX76849	Canola	nucleus	32.27	25.29
CDY46061	Canola	nucleus	32.48	25.16
CDX84585	Canola	nucleus	34.39	24.14
CDY44476	Canola	nucleus	28.87	23.94
CDX75085	Canola	nucleus	31.63	23.73
CDX79646	Canola	nucleus	34.39	23.44
CDY39669	Canola	nucleus	32.06	23.41
CDY62523	Canola	nucleus	32.06	23.3
CDY40327	Canola	nucleus	28.45	23.18
CDY22463	Canola	nucleus	32.91	23.13
CDY10473	Canola	nucleus	28.03	22.96
CDX69252	Canola	nucleus	32.48	22.94
CDY24765	Canola	nucleus	32.27	22.79
CDX75604	Canola	nucleus	32.06	22.57
CDY69132	Canola	nucleus	27.18	22.3
CDY48107	Canola	nucleus	26.96	22.09
CDX68927	Canola	nucleus	21.02	21.48
CDX75313	Canola	nucleus	21.02	21.24
CDY13511	Canola	nucleus	19.32	20.82
CDY55113	Canola	nucleus	22.72	20.46
CDX80798	Canola	nucleus	22.72	20.11
CDX72383	Canola	nucleus	18.9	19.69
CDX68925	Canola	cytosol	7.01	18.23
CDX68906	Canola	nucleus	4.67	8.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:A0A078ISQ9	UniProt:A0A078ISQ9	EnsemblPlants:CDY52073	ProteinID:CDY52073
ProteinID:CDY52073.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00004808001	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF65	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689
UniParc:UPI0004EEFE2B	SEG:seg	:	:	:	:

Description

BnaCnng21740DBnaCnng21740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISQ9]

Coordinates

chrLK033054:+:13638..16113

Molecular Weight (calculated)

53483.3 Da

IEP (calculated)

7.005

GRAVY (calculated)

-0.839

Length

471 amino acids

Sequence
(BLAST)

001: MAVYYPTSTV GMQSLYQEPI YLNEQASSSS AGAGANCLEI PNSVPNEMVF IPPTSDTSLN GNVTVSSNDL SFHGGGLSLS LGNQIQYHYQ NLSNQLSYNE
101: ENGKSHHHQH HHQVPSFGFY NNGFVSSVLR SRYLKPTQQL LDEVVSVKKT KNNEKGQDFT NGSKPNDTNN TENNEELSPS ERQELQSKKN KLLTMVDEVD
201: KRYNQYYHQM EALASSFEIG AGVGAAKPYT SVALNRISRH FRCLRDAIKE QIQVIRGKLG EKETAEEQGE RIPRLRYLDQ RLRQQRALHQ QLGMVRPTWR
301: PQRGLPENSV SILRAWLFEH FLHPYPKESE KIMLAKQTGL SKNQVANWFI NARVRLWKPM IEEMYKEEFG DSSELLSNSN QGSSSSNKKN RMNETSQLKH
401: EDTSSSQQQN HGNNIPYTSD AEENLIFADP KPDSLMNYNG FGVVDYNGYI GLGNQQDGRF SNPHQLHDFV V

Best Arabidopsis Sequence Match ( AT1G75410.1 )
(BLAST)

001: MAVYYPNSVG MQSLYQESIY LNEQQQQQQQ ASSSSAASFS EIVSGDVRNN EMVFIPPTSD VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY
101: HYQNLSNQLS YNNLNPSTMS DENGKSLSVH QHHSDQILPS SVYNNNGNNG VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL LDEVVSVRKD LKLGNKKMKN
201: DKGQDFHNGS SDNITEDDKS QSQELSPSER QELQSKKSKL LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI
301: QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA
401: RVRLWKPMIE EMYKEEFGES AELLSNSNQD TKKMQETSQL KHEDSSSSQQ QNQGNNNNNI PYTSDAEQNL VFADPKPDRA TTGDYDSLMN YHGFGIDDYN
501: RYVGLGNQQD GRYSNPHQLH DFVV

Arabidopsis Description

BLH3BEL1-like homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.