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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68812
CDX72343
CDX75215
CDX80491
CDX80798
CDX83145
CDX88165
CDY10473
CDY12943
CDY13472
CDY19545
CDY34012
CDY40327
CDY48107
CDY55113
CDY68624
CDY69132

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02030.1 CDY12943 AT1G62360.1 12897247
AT5G02030.1 CDY19545 AT1G62360.1 12897247
AT5G02030.1 CDY12943 AT1G62360.1 15019989
AT5G02030.1 CDY19545 AT1G62360.1 15019989
AT5G02030.1 CDY12943 AT1G62360.1 15781858
AT5G02030.1 CDY19545 AT1G62360.1 15781858
AT5G02030.1 CDY12943 AT1G62360.1 16513846
AT5G02030.1 CDY19545 AT1G62360.1 16513846
AT5G02030.1 CDX83145 AT4G08150.1 12897247
AT5G02030.1 CDY34012 AT4G08150.1 12897247
AT5G02030.1 CDY68624 AT4G08150.1 12897247
AT5G02030.1 CDX83145 AT4G08150.1 15019989
AT5G02030.1 CDY34012 AT4G08150.1 15019989
AT5G02030.1 CDY68624 AT4G08150.1 15019989
AT5G02030.1 CDX83145 AT4G08150.1 15781858
AT5G02030.1 CDY34012 AT4G08150.1 15781858
AT5G02030.1 CDY68624 AT4G08150.1 15781858
AT5G02030.1 CDX68812 AT4G32040.1 15781858
AT5G02030.1 CDX72343 AT4G32040.1 15781858
AT5G02030.1 CDX75215 AT4G32040.1 15781858
AT5G02030.1 CDY13472 AT4G32040.1 15781858
AT5G02030.1 CDX80798 AT5G02030.1 15781858
AT5G02030.1 CDY10473 AT5G02030.1 15781858
AT5G02030.1 CDY40327 AT5G02030.1 15781858
AT5G02030.1 CDY48107 AT5G02030.1 15781858
AT5G02030.1 CDY55113 AT5G02030.1 15781858
AT5G02030.1 CDY69132 AT5G02030.1 15781858
AT5G02030.1 CDX80491 AT5G25220.1 15781858
AT5G02030.1 CDX88165 AT5G25220.1 15781858
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80798 Canola nucleus 94.26 92.67
Bra005703.1-P Field mustard nucleus 98.85 90.7
AT5G02030.1 Thale cress nucleus 87.0 79.13
CDY10473 Canola nucleus 85.09 77.39
CDY48107 Canola nucleus 84.89 77.22
CDY40327 Canola nucleus 85.28 77.16
CDY69132 Canola nucleus 84.51 77.0
GSMUA_Achr10P... Banana nucleus 9.94 50.98
Solyc10g086640.1.1 Tomato nucleus 22.75 46.12
Solyc09g011380.2.1 Tomato nucleus 41.3 42.86
PGSC0003DMT400062353 Potato nucleus 40.73 42.18
KRH00065 Soybean nucleus 44.93 41.01
VIT_08s0007g01290.t01 Wine grape nucleus 49.71 40.5
KRH75724 Soybean nucleus 46.46 39.9
KRH65931 Soybean nucleus 46.08 39.06
GSMUA_Achr10P... Banana plastid 6.88 37.11
PGSC0003DMT400049235 Potato nucleus 40.54 36.87
GSMUA_Achr7P14960_001 Banana nucleus 27.72 32.95
TraesCS1D01G280300.1 Wheat nucleus 35.18 32.11
TraesCS1A01G281100.1 Wheat nucleus 34.99 31.88
EES18336 Sorghum nucleus 34.61 31.75
Os05t0455200-01 Rice nucleus 35.18 31.72
TraesCS1B01G290200.1 Wheat nucleus 35.18 31.72
Zm00001d038355_P001 Maize nucleus 34.42 31.25
CDX83753 Canola nucleus 11.09 30.53
Os01t0848400-01 Rice nucleus 35.56 30.39
EES03882 Sorghum nucleus 34.03 30.02
Zm00001d042864_P002 Maize nucleus 33.65 29.98
Zm00001d010060_P001 Maize nucleus 32.5 29.67
TraesCS3B01G396100.1 Wheat nucleus 33.65 28.39
TraesCS3D01G357400.1 Wheat nucleus 33.46 28.09
TraesCS3A01G363900.1 Wheat nucleus 33.65 28.03
GSMUA_Achr5P07020_001 Banana nucleus 27.92 27.81
CDX73171 Canola nucleus 13.96 25.26
CDY47523 Canola nucleus 13.96 25.26
CDY29411 Canola nucleus 18.74 25.19
HORVU3Hr1G072010.1 Barley mitochondrion 6.12 25.0
CDX71279 Canola nucleus 17.78 23.97
CDY02261 Canola nucleus 20.46 23.83
CDY63699 Canola nucleus 18.93 23.68
HORVU1Hr1G072850.1 Barley nucleus, plastid 35.76 23.55
CDX89711 Canola nucleus 20.46 23.52
CDY45383 Canola nucleus 11.47 22.81
CDY52073 Canola nucleus 20.46 22.72
CDY46209 Canola nucleus 16.25 22.49
CDY39031 Canola nucleus 20.46 22.38
CDX68129 Canola nucleus 19.31 21.35
CDY30566 Canola nucleus 17.97 20.98
CDX73170 Canola nucleus 20.46 20.82
CDY47524 Canola nucleus 20.27 20.54
CDX77099 Canola nucleus 17.59 20.49
CDX76849 Canola nucleus 23.52 20.47
CDY32069 Canola nucleus 24.86 20.44
CDY40420 Canola nucleus 24.67 20.41
CDY46061 Canola nucleus 23.71 20.39
CDY44476 Canola nucleus 21.99 20.25
CDY39359 Canola nucleus 20.08 20.23
CDX96653 Canola nucleus 19.5 20.16
CDY39669 Canola nucleus 24.47 19.84
CDX75307 Canola nucleus 8.41 19.82
CDX69252 Canola nucleus 25.24 19.79
CDX75604 Canola nucleus 25.24 19.73
CDX85896 Canola nucleus 18.93 19.68
CDY62523 Canola nucleus 24.09 19.44
CDY24765 Canola nucleus 24.67 19.34
CDX84171 Canola nucleus 21.61 19.22
CDX84585 Canola nucleus 24.28 18.93
CDY22463 Canola nucleus 24.09 18.81
CDX79646 Canola nucleus 24.28 18.38
CDX75085 Canola nucleus 21.8 18.15
HORVU3Hr1G085720.1 Barley nucleus, plastid 25.62 17.8
CDY45321 Canola nucleus, plastid 18.16 13.87
CDX75313 Canola nucleus 12.24 13.73
CDY21826 Canola extracellular, plastid 2.49 13.54
CDY13511 Canola nucleus 11.28 13.5
CDX68927 Canola nucleus 11.66 13.23
CDX72383 Canola nucleus 10.52 12.17
CDX68925 Canola cytosol 3.44 9.94
CDX68906 Canola nucleus 4.21 8.49
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.5GO:A0A078IUL4UniProt:A0A078IUL4EnsemblPlants:CDY55113ProteinID:CDY55113
ProteinID:CDY55113.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00016411001InterPro:Homeobox-like_sfInterPro:Homeobox_KN_domain
InterPro:Homeobox_domInterPro:IPR001356PFAM:PF05920PFAM:PF07526InterPro:POX_domPFscan:PS50071
PANTHER:PTHR11850PANTHER:PTHR11850:SF82SMART:SM00389SMART:SM00574SUPFAM:SSF46689UniParc:UPI0004EF0F9D
SEG:seg:::::
Description
BnaA03g54930DBnaA03g54930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUL4]
Coordinates
chrLK033376:+:9146..12667
Molecular Weight (calculated)
56153.1 Da
IEP (calculated)
7.553
GRAVY (calculated)
-0.498
Length
523 amino acids
Sequence
(BLAST)
001: MADAYEPYHI LQQSRRDKLR IPSLDSHFHF HHPPPPSFSG GGLFPLAAGG FHSNSNNHIS NPSYSNFMGF LGGPSSSSSA AVTVAGDPSF NGELSSGDVL
101: VFRPEPLSLS LSSHPRLAYD PVVPGAVSSG FSRSAAEAAA AAVTVASRSS GPLGPFTGYA SILKGSRFLK PAQMLLDEFC NVGRGVYTDK VMDDDDSSLL
201: FDPTVETLCG VSEEHGKKKS KLISMLDEAY KRYKQYYEQL QAVMGSFECV AGLGHAAPYA SLTLKALSKH FKCLKTAITD QLQFTNNKIQ QQCGHVMNSD
301: NKTDSLRFGG SDSGRDFYPT DTDKLVLAKQ TGLSRNQVSN WFINARVRVW KPMVEEIHML ETRQSQRSSS SSWRDEHSTT VFPDNNNDNP SSSSAQQRAN
401: NNSSPARRVR NHDVHGTNNN NNNNFMNAGN GGSGGGAVSF SYGIASSNVP GMSNSTNGGV SLTLGLHHQI GLSEPFPMTT AQRLGLDGGS SGGGGGGYDG
501: QNRQFGRDFI GGSNHQFLHD FVG
Best Arabidopsis Sequence Match ( AT2G27990.1 )
(BLAST)
001: MDMIKPDFQQ IRRDKFRVEQ MNDFPNTWTQ QQHQNIRIPN NLDLIGILQN QISVPVQTDL YQDSAATFMN MPQSIHRDPQ GPSNWRISDL SQPSTVNHGY
101: DQAGIRPNNV ADLLSDHFSS RNQILDRPLY VGRDSIPQSS MIRRSEVSCL DDNQKGCVTV ACSGTGNEIL RSSYDQGSSS GSYRGEFSFL PSLENQSVAH
201: NASNWNHGPV NVTATSHTNS KKGFPLSLLS DIPPSRDVGN AAVLSTMNIH GPLGPFTGYA SILKSSRFLE PAQKMLEEFC ISYASKIISR SESTSMEDDD
301: DDDDNLSGFS SSSEPLEPKN RLKKAKLLFL QEEVCKWYKL YNHQLQTVMS SFNTVAGLNT ATPYISLALK RTSRSFKALR TAIAEHVKQI SSHSSNGNNN
401: NRFQKRQRSL IGNNVGFESQ QQHIWRPQRG LPERAVAVLR AWLFDHFLHP YPTDSDKQML ATQTGLSRNQ VSNWFINARV RLWKPMVEEI HTLETKAIKN
501: ADTSHNIEPS NRPNTVSSPS HEQTLTGLSG TKRSRLEYMD MVGFNRGNVS LTLELRRGVD NVIQTQTQDH QFGTGSQMFH DFVG
Arabidopsis Description
BLH8BEL1-like homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.