Factsheet for GSMUA_Achr5P07020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P09570_001
GSMUA_Achr1P19120_001
GSMUA_Achr2P09660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P12130_001
GSMUA_Achr3P13490_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P07020_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P14960_001
GSMUA_Achr7P27540_001
GSMUA_Achr9P09770_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02030.1	GSMUA_Achr1P09570_001	AT1G26260.1	15781858
AT5G02030.1	GSMUA_Achr1P19120_001	AT1G26260.1	15781858
AT5G02030.1	GSMUA_Achr2P09660_001	AT1G26260.1	15781858
AT5G02030.1	GSMUA_Achr3P12130_001	AT1G26260.1	15781858
AT5G02030.1	GSMUA_Achr3P13490_001	AT1G26260.1	15781858
AT5G02030.1	GSMUA_Achr9P09770_001	AT1G26260.1	15781858
AT5G02030.1	GSMUA_Achr10P...	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr2P13200_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr3P26230_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr4P03120_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr4P28270_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr4P32230_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr5P01960_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr6P04640_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr7P08050_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr7P27540_001	AT4G08150.1	12897247
AT5G02030.1	GSMUA_Achr10P...	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr2P13200_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr3P26230_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr4P03120_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr4P28270_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr4P32230_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr5P01960_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr6P04640_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr7P08050_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr7P27540_001	AT4G08150.1	15019989
AT5G02030.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT5G02030.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT5G02030.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT5G02030.1	GSMUA_Achr5P07020_001	AT5G02030.1	15781858
AT5G02030.1	GSMUA_Achr7P14960_001	AT5G02030.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P14960_001	Banana	nucleus	63.24	75.45
GSMUA_Achr10P...	Banana	nucleus	13.9	71.57
GSMUA_Achr10P...	Banana	plastid	12.57	68.04
HORVU3Hr1G072010.1	Barley	mitochondrion	13.33	54.69
GSMUA_Achr5P03140_001	Banana	nucleus	7.43	50.65
Solyc10g086640.1.1	Tomato	nucleus	24.38	49.61
Os01t0848400-01	Rice	nucleus	49.71	42.65
Zm00001d042864_P002	Maize	nucleus	47.62	42.59
EES03882	Sorghum	nucleus	48.0	42.5
GSMUA_Achr11P...	Banana	plastid	21.14	42.21
EES18336	Sorghum	nucleus	45.71	42.11
TraesCS1D01G280300.1	Wheat	nucleus	45.71	41.88
TraesCS1B01G290200.1	Wheat	nucleus	46.1	41.72
Os05t0455200-01	Rice	nucleus	45.9	41.55
TraesCS1A01G281100.1	Wheat	nucleus	45.33	41.46
Zm00001d038355_P001	Maize	nucleus	45.33	41.32
Zm00001d010060_P001	Maize	nucleus	43.05	39.44
TraesCS3D01G357400.1	Wheat	nucleus	46.67	39.33
TraesCS3B01G396100.1	Wheat	nucleus	46.1	39.03
TraesCS3A01G363900.1	Wheat	nucleus	46.67	39.01
Solyc09g011380.2.1	Tomato	nucleus	35.43	36.9
PGSC0003DMT400062353	Potato	nucleus	35.24	36.63
GSMUA_Achr2P06410_001	Banana	nucleus	9.33	33.79
GSMUA_Achr4P07450_001	Banana	nucleus	18.86	32.67
KRH00065	Soybean	nucleus	35.43	32.46
VIT_08s0007g01290.t01	Wine grape	nucleus	39.62	32.4
GSMUA_Achr4P14670_001	Banana	nucleus	18.29	32.32
KRH75724	Soybean	nucleus	37.33	32.18
HORVU1Hr1G072850.1	Barley	nucleus, plastid	48.38	31.99
KRH65931	Soybean	nucleus	37.33	31.77
GSMUA_Achr5P08840_001	Banana	nucleus	19.05	31.55
PGSC0003DMT400049235	Potato	nucleus	34.29	31.3
AT5G02030.1	Thale cress	nucleus	34.1	31.13
CDY10473	Canola	nucleus	33.9	30.96
CDY40327	Canola	nucleus	33.9	30.8
Bra009618.1-P	Field mustard	nucleus	34.1	30.55
Bra005703.1-P	Field mustard	nucleus	32.76	30.18
CDY48107	Canola	nucleus	32.95	30.09
CDY69132	Canola	nucleus	32.57	29.79
Bra028883.1-P	Field mustard	nucleus	32.95	29.62
GSMUA_Achr1P26900_001	Banana	nucleus	21.9	28.89
CDY55113	Canola	nucleus	27.81	27.92
CDX80798	Canola	nucleus	27.62	27.26
GSMUA_Achr4P04480_001	Banana	nucleus	21.52	26.84
GSMUA_Achr1P03680_001	Banana	nucleus	15.05	26.69
GSMUA_Achr10P...	Banana	nucleus	20.95	26.32
HORVU3Hr1G085720.1	Barley	nucleus, plastid	37.33	26.03
VIT_13s0019g02450.t01	Wine grape	nucleus	24.57	25.9
GSMUA_Achr6P07130_001	Banana	nucleus	23.81	25.46
GSMUA_Achr1P06400_001	Banana	nucleus	24.95	25.39
GSMUA_Achr1P23300_001	Banana	extracellular	20.57	25.0
GSMUA_Achr4P12180_001	Banana	nucleus	24.57	24.67
GSMUA_Achr2P04310_001	Banana	nucleus	23.24	21.86
GSMUA_Achr9P21580_001	Banana	nucleus	22.67	21.79
GSMUA_Achr9P18740_001	Banana	nucleus	23.05	21.01
GSMUA_Achr3P29230_001	Banana	nucleus	17.52	20.35
GSMUA_Achr6P18180_001	Banana	nucleus	24.57	20.35
GSMUA_Achr7P27440_001	Banana	nucleus	25.9	19.88
GSMUA_Achr4P13590_001	Banana	nucleus	21.14	19.51
GSMUA_Achr5P03130_001	Banana	cytosol	12.0	18.86
GSMUA_Achr10P...	Banana	nucleus	26.1	18.17
GSMUA_Achr2P06420_001	Banana	nucleus	12.38	17.62
GSMUA_Achr4P06630_001	Banana	nucleus	18.1	16.78
GSMUA_Achr2P19430_001	Banana	nucleus	16.0	15.53
GSMUA_AchrUn_...	Banana	nucleus	17.33	15.35
GSMUA_Achr4P02680_001	Banana	nucleus	14.67	13.3
GSMUA_Achr11P...	Banana	plastid	8.19	10.54

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr5G07020_001	EnsemblPlants:GSMUA_Achr5P07020_001	EnsemblPlants:GSMUA_Achr5T07020_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:M0SWD1	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071
PANTHER:PTHR11850	PANTHER:PTHR11850:SF82	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	TMHMM:TMhelix
UniParc:UPI0002949999	SEG:seg	:	:	:	:

Description

Putative uncharacterized protein Sb03g039840 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07020_001]

Coordinates

chr5:+:5080662..5085089

Molecular Weight (calculated)

57317.5 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.456

Length

525 amino acids

Sequence
(BLAST)

001: MNSSSHHITA VFPLSPFAFT APLFTLFSFF IACSVESERS SEKLRASAPS LSPGKKKKRE MASSAADRFV GGGGGGGDEP MLLHHPQMYD HVPQHSRREK
101: LRFPLEGSSP PSASFLLLHD ADAAPSLYPA NSLTAFLPSS SSSSREMLLD ADPPRESLMD HGVDVVAGHG TKEDRAVAGT EQQWKKTRLI SMLDEVYRRY
201: KQCYQQVQAV IASFESVAGL STASPYASMA LKAMSKHFKC LKNIISGQLR QTSNKGHGDE GVSREDISSF GLLNSSNYLQ KTTNSPATFA QPHVWRPQRG
301: LPERAVSVLR AWLFEHFLHP YPTDVDKQNL AKQTGLTRNQ VSNWFINARV RLWKPMVEEV HSLELRQKNK TSASGGSNCA TTDEQPQPPP SSRSNPLSSP
401: QFQVASICRN QNSVTEGIHE ELTSMRNHIQ GGPVNFVYDM SNHQHVAGGA SVVAAGGNGN GNGNGVSLTL GLHQDSGVCF SEPLPLNVAR RFGLEECNDT
501: YLVSSFGAQE RQFGKDVIGG RLLHS

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.