Factsheet for GSMUA_Achr2P06420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16400.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT2G16400.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06410_001	Banana	nucleus	18.97	48.28
GSMUA_Achr5P03140_001	Banana	nucleus	7.05	33.77
Bra013075.1-P	Field mustard	nucleus	26.56	23.0
GSMUA_Achr3P29230_001	Banana	nucleus	27.91	22.79
GSMUA_Achr1P03680_001	Banana	nucleus	18.16	22.64
GSMUA_Achr1P23300_001	Banana	extracellular	26.02	22.22
GSMUA_Achr10P...	Banana	nucleus	24.93	22.01
CDY02261	Canola	nucleus	26.56	21.83
Bra013076.1-P	Field mustard	nucleus	26.56	21.78
CDX89711	Canola	nucleus	26.56	21.54
CDY46209	Canola	nucleus	21.95	21.43
GSMUA_Achr10P...	Banana	nucleus	5.69	20.59
GSMUA_Achr9P21580_001	Banana	nucleus	30.35	20.51
Bra001976.1-P	Field mustard	nucleus	23.85	19.82
GSMUA_Achr6P07130_001	Banana	nucleus	26.02	19.55
GSMUA_Achr4P13590_001	Banana	nucleus	29.81	19.33
GSMUA_Achr4P04480_001	Banana	nucleus	21.95	19.24
AT2G16400.1	Thale cress	nucleus	24.66	18.88
GSMUA_Achr4P06630_001	Banana	nucleus	28.46	18.55
AT4G34610.3	Thale cress	nucleus	26.56	18.42
Bra017666.1-P	Field mustard	nucleus	26.29	18.37
GSMUA_Achr11P...	Banana	plastid	12.74	17.87
GSMUA_Achr1P26900_001	Banana	nucleus	18.7	17.34
GSMUA_Achr5P03130_001	Banana	cytosol	15.45	17.07
VIT_03s0038g00050.t01	Wine grape	nucleus	31.44	16.79
HORVU4Hr1G003800.7	Barley	nucleus	29.0	16.61
TraesCS4A01G289400.1	Wheat	nucleus	28.73	16.61
TraesCS4D01G022600.1	Wheat	nucleus	28.73	16.61
TraesCS4B01G025500.1	Wheat	nucleus	28.73	16.59
GSMUA_Achr5P08840_001	Banana	nucleus	14.09	16.4
Os12t0636200-01	Rice	nucleus	28.46	16.23
TraesCS5D01G013300.1	Wheat	nucleus	28.18	16.0
TraesCS5A01G007800.1	Wheat	nucleus	28.18	16.0
CDX71279	Canola	nucleus	16.8	15.98
HORVU5Hr1G001090.1	Barley	nucleus	27.91	15.87
Zm00001d013547_P002	Maize	nucleus	27.37	15.81
KXG24130	Sorghum	nucleus	28.18	15.81
GSMUA_Achr6P18180_001	Banana	nucleus	26.83	15.62
Zm00001d031182_P002	Maize	nucleus	28.18	15.57
GSMUA_Achr4P07450_001	Banana	nucleus	12.74	15.51
GSMUA_Achr4P14670_001	Banana	nucleus	12.47	15.49
TraesCS5B01G006400.1	Wheat	nucleus	28.18	15.45
Os03t0680800-02	Rice	nucleus	28.18	15.41
EER91079	Sorghum	nucleus	26.83	15.25
Zm00001d033378_P003	Maize	nucleus	26.83	15.21
GSMUA_Achr9P18740_001	Banana	nucleus	23.58	15.1
GSMUA_Achr7P14960_001	Banana	nucleus	17.89	15.0
GSMUA_Achr1P06400_001	Banana	nucleus	20.87	14.92
GSMUA_Achr4P12180_001	Banana	nucleus	20.87	14.72
CDY45321	Canola	nucleus, plastid	26.02	14.01
GSMUA_Achr2P04310_001	Banana	nucleus	20.6	13.62
GSMUA_Achr7P27440_001	Banana	nucleus	25.2	13.6
GSMUA_Achr2P19430_001	Banana	nucleus	18.7	12.75
GSMUA_Achr5P07020_001	Banana	nucleus	17.62	12.38
GSMUA_AchrUn_...	Banana	nucleus	19.78	12.31
GSMUA_Achr4P02680_001	Banana	nucleus	18.43	11.74
GSMUA_Achr10P...	Banana	nucleus	20.33	9.95
GSMUA_Achr11P...	Banana	plastid	9.76	8.82
GSMUA_Achr10P...	Banana	plastid	1.08	4.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G06420_001	EnsemblPlants:GSMUA_Achr2P06420_001
EnsemblPlants:GSMUA_Achr2T06420_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0S5N3
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF191
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000296ADBE	SEG:seg	:	:

Description

Putative homeobox domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G06420_001]

Coordinates

chr2:-:11245166..11247797

Molecular Weight (calculated)

40718.9 Da

IEP (calculated)

5.326

GRAVY (calculated)

-0.424

Length

369 amino acids

Sequence
(BLAST)

001: MSTFFLNPSN QMDKIPNLHM REPGHYRSSG ASVLGNLQYH NYSSSIAISD TLAAGDTQPQ QNSIELSVSL GSTRGNLDTV TSCTGEHAYG SWKDGKNEMS
101: FMQTVSVAIE DEEDLLHGNE PQISLQRELG MLDRQSLSLQ LSDVSTMPCQ GLSLSLTTQI PVPSIQYLPG SSDLSLFCPH QTTSGSGVSC RNQNYQNMTY
201: LKAGQQLLNE VVNVHKALKQ HSDKAQNLHS SPINSMDKDG TAKSKGEGKS TNPQDSTINS STELSLSETQ DLQDKVTKLL AMLDEVLYLY KQYFHQMQTT
301: VSSFDEVRPQ SGLPDSSVSI LCAWLFEHFL DPYPINSEKL MLAKQTGLTR SQVSNWFINA LVRLCFGSL

Best Arabidopsis Sequence Match ( AT1G75410.1 )
(BLAST)

001: MAVYYPNSVG MQSLYQESIY LNEQQQQQQQ ASSSSAASFS EIVSGDVRNN EMVFIPPTSD VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY
101: HYQNLSNQLS YNNLNPSTMS DENGKSLSVH QHHSDQILPS SVYNNNGNNG VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL LDEVVSVRKD LKLGNKKMKN
201: DKGQDFHNGS SDNITEDDKS QSQELSPSER QELQSKKSKL LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI
301: QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA
401: RVRLWKPMIE EMYKEEFGES AELLSNSNQD TKKMQETSQL KHEDSSSSQQ QNQGNNNNNI PYTSDAEQNL VFADPKPDRA TTGDYDSLMN YHGFGIDDYN
501: RYVGLGNQQD GRYSNPHQLH DFVV

Arabidopsis Description

BLH3BEL1-like homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.