CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90950
EER91090
EER95833
KXG20488
KXG40306
OQU84501
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16400.1	KXG40306	AT1G62990.1	15781858
AT2G16400.1	EER90950	AT4G08150.1	15781858
AT2G16400.1	EER91090	AT4G08150.1	15781858
AT2G16400.1	EER95833	AT4G08150.1	15781858
AT2G16400.1	OQU90921	AT4G08150.1	15781858
AT2G16400.1	OQU91064	AT4G08150.1	15781858
AT2G16400.1	EER90950	AT4G08150.1	21798944
AT2G16400.1	EER91090	AT4G08150.1	21798944
AT2G16400.1	EER95833	AT4G08150.1	21798944
AT2G16400.1	OQU90921	AT4G08150.1	21798944
AT2G16400.1	OQU91064	AT4G08150.1	21798944
AT2G16400.1	KXG20488	AT4G32040.1	15781858
AT2G16400.1	OQU84501	AT4G32040.1	15781858
AT2G16400.1	KXG20488	AT5G25220.1	15781858
AT2G16400.1	OQU84501	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013547_P002	Maize	nucleus	91.83	93.27
Zm00001d033378_P003	Maize	nucleus	93.53	93.24
TraesCS4A01G289400.1	Wheat	nucleus	76.89	78.21
TraesCS4D01G022600.1	Wheat	nucleus	76.12	77.43
TraesCS4B01G025500.1	Wheat	nucleus	75.96	77.15
HORVU4Hr1G003800.7	Barley	nucleus	75.5	76.09
Os03t0680800-02	Rice	nucleus	78.12	75.11
KXG24130	Sorghum	nucleus	74.27	73.25
GSMUA_Achr1P23300_001	Banana	extracellular	35.59	53.47
Bra013075.1-P	Field mustard	nucleus	31.59	48.12
CDY02261	Canola	nucleus	33.28	48.11
Bra013076.1-P	Field mustard	nucleus	33.28	48.0
GSMUA_Achr9P21580_001	Banana	nucleus	40.37	47.99
CDX89711	Canola	nucleus	33.13	47.25
GSMUA_Achr3P29230_001	Banana	nucleus	32.2	46.24
GSMUA_Achr4P13590_001	Banana	nucleus	40.52	46.22
CDY46209	Canola	nucleus	26.19	44.97
AT2G16400.1	Thale cress	nucleus	33.28	44.81
VIT_03s0038g00050.t01	Wine grape	nucleus	47.61	44.72
GSMUA_Achr4P06630_001	Banana	nucleus	37.9	43.46
Bra017666.1-P	Field mustard	nucleus	35.29	43.37
AT4G34610.3	Thale cress	nucleus	35.29	43.05
Bra001976.1-P	Field mustard	nucleus	29.43	43.02
EER92806	Sorghum	nucleus	38.37	42.2
CDX71279	Canola	nucleus	22.5	37.63
EES09309	Sorghum	nucleus	33.9	31.88
CDY45321	Canola	nucleus, plastid	32.36	30.66
KXG37846	Sorghum	nucleus	16.49	30.06
EER89055	Sorghum	nucleus	24.04	29.77
GSMUA_Achr2P06420_001	Banana	nucleus	15.25	26.83
EER92018	Sorghum	nucleus	25.42	26.03
KXG40303	Sorghum	nucleus	24.5	25.4
EER93512	Sorghum	nucleus, plastid	28.97	24.42
EES18336	Sorghum	nucleus	20.65	23.51
EES03882	Sorghum	nucleus	20.18	22.09
KXG20197	Sorghum	nucleus	15.1	19.84
EES04785	Sorghum	nucleus	15.87	18.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	UniProt:C5WPM9	ncoils:Coil	EnsemblPlants:EER91079	ProteinID:EER91079
ProteinID:EER91079.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF191	SMART:SM00389	SMART:SM00574	EnsemblPlantsGene:SORBI_3001G137100	SUPFAM:SSF46689	unigene:Sbi.11288
UniParc:UPI0001A81F42	RefSeq:XP_002464081.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:10870887..10877123

Molecular Weight (calculated)

71790.3 Da

IEP (calculated)

5.683

GRAVY (calculated)

-0.747

Length

649 amino acids

Sequence
(BLAST)

001: MATYYSSPGS ERDSQTMYST ESGNASYPVP SALGNFLYPN NASSGPYTEF SGIVQPQQNF MELTGHPSAM SHDSSSNEAT NMSTSLTEQR SFGPLKDMRN
101: EMLMHLMDGA HSSGSDLIHN DAHSTAQLEF GMLNNHNSSV PSAPGQGLSL SLNTHILAPS YPYWSAKQDL LTPNSYQGDD NRMKNMQSEA SQAIRNSKYL
201: KAAQELLDEI VSVWKSVKQK TDKGPAEAGK ADGKETDGGT KSDGVSSDPQ ESGANAAAEL STAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQLVMSSF
301: DMVAGSGAAK PYTAVALQTI SRHFRCLKDA INDQISVIRK KLGEDDTTSG KEGKLTRLRY IDQQIRQQRA FQQYGMLQQN AWRPQRGLPE NSVSILRAWL
401: FEHFLHPYPK DSEKIMLSRQ TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEAELDSN SSSDNGQRNR DKAPSSEEKE DLKTSTSQVC QTSQLDESKA
501: SVGGMMSFSG APAGGFHNEA NPDDSFMSLM LKAQRAGETD GSGFLHDAVA HHSDESARFM AYHMAEFGRY GNNNVSLTLG LQHAENSLSV PPNTQPGFPG
601: VRDQDIYNAT APLNVASTSS EYDSASQIDQ QQQQRQRFEP SPLMHDFVA

Best Arabidopsis Sequence Match ( AT4G34610.2 )
(BLAST)

001: MENYPETQFI PGDSMIQNAI VSYSEESAGR ERRTEANNVS ASQERQALSR FGGVPQMQNI GQDFGSWRDQ ASDRNGFQLM SAMAGATGIL QTGQGLSLSL
101: GSQILPGIHQ ISHQNMAPRG NEYATQSFPG GNQNLDVVRT IPNSKYLKAA QQLLDEAVNV KKALKQFQAE GDKNNENPQE PNQSTQDSST NPPADISQSE
201: RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVLRKCLGE QQDGSDGKRV GIISRLKYVD
301: QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKM
401: SEIGPVAADD EDRAREFSQD QTKPDHGHGY GEETRGMVQG SHMDGRRFMA VEPTYHVADT SRLGRGDVSL TLGLQNSQGQ DNVVAMSSEA YNNFSGVDIY
501: ENAIPGDEME YVNPGSRQNR INSSQLVHDF VA

Arabidopsis Description

BLH6BEL1-like homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O65685]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.