Factsheet for HORVU4Hr1G003800.7

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G061320.3
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G084680.1
HORVU5Hr1G098570.6
HORVU6Hr1G028610.2
HORVU7Hr1G114650.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16400.1	HORVU4Hr1G084680.1	AT1G62990.1	15781858
AT2G16400.1	HORVU2Hr1G061320.3	AT4G08150.1	15781858
AT2G16400.1	HORVU4Hr1G003360.1	AT4G08150.1	15781858
AT2G16400.1	HORVU4Hr1G003410.3	AT4G08150.1	15781858
AT2G16400.1	HORVU4Hr1G009730.1	AT4G08150.1	15781858
AT2G16400.1	HORVU5Hr1G098570.6	AT4G08150.1	15781858
AT2G16400.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT2G16400.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT2G16400.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT2G16400.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT2G16400.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT2G16400.1	HORVU6Hr1G028610.2	AT4G32040.1	15781858
AT2G16400.1	HORVU7Hr1G114650.2	AT4G32040.1	15781858
AT2G16400.1	HORVU6Hr1G028610.2	AT5G25220.1	15781858
AT2G16400.1	HORVU7Hr1G114650.2	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G022600.1	Wheat	nucleus	93.79	94.67
TraesCS4A01G289400.1	Wheat	nucleus	93.63	94.51
TraesCS4B01G025500.1	Wheat	nucleus	93.01	93.74
EER91079	Sorghum	nucleus	76.09	75.5
Zm00001d013547_P002	Maize	nucleus	73.6	74.18
Zm00001d033378_P003	Maize	nucleus	74.53	73.73
Os03t0680800-02	Rice	nucleus	76.55	73.04
HORVU5Hr1G001090.1	Barley	nucleus	70.19	69.65
GSMUA_Achr1P23300_001	Banana	extracellular	36.34	54.17
GSMUA_Achr9P21580_001	Banana	nucleus	41.46	48.9
GSMUA_Achr3P29230_001	Banana	nucleus	33.85	48.23
GSMUA_Achr4P13590_001	Banana	nucleus	42.24	47.8
Bra013075.1-P	Field mustard	nucleus	31.37	47.42
CDY02261	Canola	nucleus	32.76	46.99
Bra013076.1-P	Field mustard	nucleus	32.61	46.67
CDX89711	Canola	nucleus	32.92	46.59
CDY46209	Canola	nucleus	26.55	45.24
AT2G16400.1	Thale cress	nucleus	33.54	44.81
GSMUA_Achr4P06630_001	Banana	nucleus	38.82	44.17
VIT_03s0038g00050.t01	Wine grape	nucleus	46.89	43.7
Bra017666.1-P	Field mustard	nucleus	35.56	43.37
AT4G34610.3	Thale cress	nucleus	35.25	42.67
Bra001976.1-P	Field mustard	nucleus	29.19	42.34
HORVU4Hr1G074250.1	Barley	nucleus	36.8	40.24
HORVU3Hr1G072010.1	Barley	mitochondrion	7.45	37.5
CDX71279	Canola	nucleus	22.05	36.6
HORVU4Hr1G003750.1	Barley	nucleus	17.86	33.63
HORVU4Hr1G020710.1	Barley	nucleus	25.16	31.15
CDY45321	Canola	nucleus, plastid	32.92	30.95
GSMUA_Achr2P06420_001	Banana	nucleus	16.61	29.0
HORVU1Hr1G049760.1	Barley	nucleus	25.0	27.01
HORVU4Hr1G084590.2	Barley	nucleus	24.53	25.4
HORVU4Hr1G010430.6	Barley	nucleus	30.12	23.98
HORVU1Hr1G072850.1	Barley	nucleus, plastid	20.96	17.0
HORVU7Hr1G088090.4	Barley	nucleus	13.51	15.7
HORVU3Hr1G085720.1	Barley	nucleus, plastid	17.7	15.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	UniProt:A0A287MZ12	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU4Hr1G003800	EnsemblPlants:HORVU4Hr1G003800.7	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF191
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000B47ABE6	SEG:seg	:

Description

No Description!

Coordinates

chrchr4H:-:8627201..8630667

Molecular Weight (calculated)

71257.0 Da

IEP (calculated)

5.584

GRAVY (calculated)

-0.717

Length

644 amino acids

Sequence
(BLAST)

001: MSNYYSSPGD ERDPQTMYSP ETGSASYPVP SALGNLLYSN NASSGPYTEF SGIIQPQQNF MELHGHPSEH SSSREPNMVT SLAEQSSFAP VKDMRNEMLM
101: HFMDGAHSGG GDLIHNDAHS SAQLEFGLLN NPSSAIVPSA PGQGLSLSLN THILAPSYPY WSPKPDLLTT QSYQGDENGM KNMQSEASRA IRNSKYLKAA
201: QELLDEIVSV WKSIKQNAQK DKVEAGKMDG KDADEVLKSE GVSSNPQESA ANAEAEISAA EKQELQNKMA KLLAMLDEVD RKYKHYFHQM QIVVSSFDMI
301: AGSGAAKPYT AVALQTISRH FRCLKDAIND QVNVIRKKLG EEDNSSGREG KLTRLRFIDQ QLRQQRAFQQ YGMLQQNAWR PQRGLPENSV SILRAWLFEH
401: FLHPYPKDSE KLMLARQTGL TRSQISNWFI NARVRLWKPM IEDMYKEETG EAELDSNSSS DNVPRSKDKM ASCEDREDQK CSMSQGQAYQ TSEFKANVGM
501: VGLTGGPASF HNEASSDDGF MNLLLKDQRP GEADGGLLHG DESARFMAYH LAELGGYQNS NVSLTLGLQH TENNLSAPNN THRPGFTVGG EGDIYNTTAA
601: HPGGGAAAAS PDYESTNQLD QRQQFEPSPL LRHDNNVPEK AWKL

Best Arabidopsis Sequence Match ( AT4G34610.2 )
(BLAST)

001: MENYPETQFI PGDSMIQNAI VSYSEESAGR ERRTEANNVS ASQERQALSR FGGVPQMQNI GQDFGSWRDQ ASDRNGFQLM SAMAGATGIL QTGQGLSLSL
101: GSQILPGIHQ ISHQNMAPRG NEYATQSFPG GNQNLDVVRT IPNSKYLKAA QQLLDEAVNV KKALKQFQAE GDKNNENPQE PNQSTQDSST NPPADISQSE
201: RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVLRKCLGE QQDGSDGKRV GIISRLKYVD
301: QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKM
401: SEIGPVAADD EDRAREFSQD QTKPDHGHGY GEETRGMVQG SHMDGRRFMA VEPTYHVADT SRLGRGDVSL TLGLQNSQGQ DNVVAMSSEA YNNFSGVDIY
501: ENAIPGDEME YVNPGSRQNR INSSQLVHDF VA

Arabidopsis Description

BLH6BEL1-like homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O65685]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.