Factsheet for GSMUA_Achr9P21580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16400.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT2G16400.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29230_001	Banana	nucleus	58.42	70.58
GSMUA_Achr4P13590_001	Banana	nucleus	72.53	69.6
GSMUA_Achr1P23300_001	Banana	extracellular	51.47	65.05
GSMUA_Achr5P03140_001	Banana	nucleus	7.88	55.84
GSMUA_Achr4P06630_001	Banana	nucleus	57.88	55.83
VIT_03s0038g00050.t01	Wine grape	nucleus	62.64	49.49
Bra013076.1-P	Field mustard	nucleus	40.48	49.11
CDX89711	Canola	nucleus	40.84	49.01
CDY02261	Canola	nucleus	40.29	49.0
Bra013075.1-P	Field mustard	nucleus	37.73	48.36
CDY46209	Canola	nucleus	32.78	47.35
AT2G16400.1	Thale cress	nucleus	41.76	47.3
Bra017666.1-P	Field mustard	nucleus	43.77	45.27
AT4G34610.3	Thale cress	nucleus	43.04	44.17
TraesCS4A01G289400.1	Wheat	nucleus	50.37	43.1
TraesCS4D01G022600.1	Wheat	nucleus	50.18	42.95
Os12t0636200-01	Rice	nucleus	50.73	42.81
Bra001976.1-P	Field mustard	nucleus	34.8	42.79
TraesCS4B01G025500.1	Wheat	nucleus	50.0	42.72
KXG24130	Sorghum	nucleus	50.92	42.25
GSMUA_Achr10P...	Banana	nucleus	7.88	42.16
TraesCS5D01G013300.1	Wheat	nucleus	50.0	42.0
TraesCS5A01G007800.1	Wheat	nucleus	50.0	42.0
HORVU5Hr1G001090.1	Barley	nucleus	49.63	41.76
HORVU4Hr1G003800.7	Barley	nucleus	48.9	41.46
GSMUA_Achr10P...	Banana	nucleus	31.5	41.15
GSMUA_Achr5P08840_001	Banana	nucleus	23.81	41.01
CDX71279	Canola	nucleus	29.12	40.98
TraesCS5B01G006400.1	Wheat	nucleus	50.18	40.71
Zm00001d013547_P002	Maize	nucleus	47.25	40.38
EER91079	Sorghum	nucleus	47.99	40.37
Zm00001d033378_P003	Maize	nucleus	47.8	40.09
GSMUA_Achr11P...	Banana	plastid	19.23	39.92
Zm00001d031182_P002	Maize	nucleus	48.35	39.52
GSMUA_Achr2P06410_001	Banana	nucleus	10.44	39.31
Os03t0680800-02	Rice	nucleus	47.99	38.81
GSMUA_Achr1P03680_001	Banana	nucleus	20.88	38.51
GSMUA_Achr4P14670_001	Banana	nucleus	20.88	38.38
GSMUA_Achr6P07130_001	Banana	nucleus	34.25	38.09
GSMUA_Achr4P07450_001	Banana	nucleus	20.88	37.62
GSMUA_Achr1P26900_001	Banana	nucleus	26.19	35.93
GSMUA_Achr6P18180_001	Banana	nucleus	39.38	33.91
GSMUA_Achr4P04480_001	Banana	nucleus	24.73	32.07
CDY45321	Canola	nucleus, plastid	39.93	31.82
GSMUA_Achr4P12180_001	Banana	nucleus	29.67	30.98
GSMUA_Achr1P06400_001	Banana	nucleus	28.75	30.43
GSMUA_Achr2P06420_001	Banana	nucleus	20.51	30.35
GSMUA_Achr5P03130_001	Banana	cytosol	18.13	29.64
GSMUA_Achr2P04310_001	Banana	nucleus	28.75	28.14
GSMUA_Achr9P18740_001	Banana	nucleus	29.3	27.78
GSMUA_Achr7P14960_001	Banana	nucleus	21.79	27.05
GSMUA_Achr10P...	Banana	plastid	4.76	26.8
GSMUA_Achr7P27440_001	Banana	nucleus	30.22	24.12
GSMUA_Achr5P07020_001	Banana	nucleus	21.79	22.67
GSMUA_Achr2P19430_001	Banana	nucleus	19.96	20.15
GSMUA_AchrUn_...	Banana	nucleus	21.61	19.9
GSMUA_Achr4P02680_001	Banana	nucleus	20.33	19.17
GSMUA_Achr10P...	Banana	nucleus	24.54	17.77
GSMUA_Achr11P...	Banana	plastid	8.06	10.78

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G21580_001
EnsemblPlants:GSMUA_Achr9P21580_001	EnsemblPlants:GSMUA_Achr9T21580_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M0U2B7	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF191	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000296E558	SEG:seg

Description

Putative homeobox domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G21580_001]

Coordinates

chr9:+:26758792..26763217

Molecular Weight (calculated)

60835.1 Da

IEP (calculated)

5.964

GRAVY (calculated)

-0.608

Length

546 amino acids

Sequence
(BLAST)

001: MSMFFMMSNN QCDTTPDLCL KDQGHPPYSE SSVPADMMYL SFSNSGAYAD ASAGSTQTQQ NHNELPVAST IISQGLTAGN SDILNSYPGD HAYNAWKDGR
101: NEMLFMQTID GVSAMQNQGL SLSLSTQMPV PSIQYQPNSS DISYIGSHQS TSGNVRPFRE EGFQNKSYLR AAQELLDEVI NVRKALRQKA EKNQWMTPNP
201: QDASANSSSE LSPSERQDLQ NKVSNLLGML DEVDRRYKQY HNQMQIIVSC FDAIAGCGAA KPYTALALQT ISRHFRCLRD AISGQIRATR KSLGEPDSSS
301: KSVGLSRLRY IDQQLRQQRA MQQFGMMQQH AWRPQRGLPE SSVSVLRAWL FEHFLHPYPK DSEKLMLARQ TGLTRSQVSN WFINARVRLW KPMIEDMYKE
401: EFGDVEIDSN SSSENPPKLK EDIQSSEDHE DLQNHATGRC QTSQMNASFL QDALAHPDGN GRFLAYQMAE LGCYGNGGVS LTLGLQHCDV GLPISDNQQS
501: LLAMRGNDGY SAAVPAGADT ADYDYANMGD QRHRFGSAHL LHDFVA

Best Arabidopsis Sequence Match ( AT2G16400.1 )
(BLAST)

001: MATYYKTGSS EIYSRPEFVP GNAMNYTNSF TETFPRDSTN NVSPSKEIQV LSSLGGVSQM VEIQDSGSWR DQEDNDRNRF PVMRRLGLSS QIETSRGNNN
101: NEYATQVVSG FTRTIHNSKY LKAAQELLDE TVNVKKALKQ FQPEGDKINE VKEKNLQTNT AEIPQAERQE LQSKLSKLLS ILDEVDRNYK QYYHQMQIVV
201: SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV IRKSLGGEQD GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL
301: RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTDAL QENDPNQSSE NTPEITEIQE LQTESSSNNG HVPGVASSSM
401: RQNTVAHGGD RFMMVTDMTR NGNGGMSLTL GIQNSDARGD VPMSGGIDNY KNTISGTDLQ YLNSRNHQHQ IGSSQLLHDF VA

Arabidopsis Description

BLH7BEL1-like homeodomain protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.