Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P01960_001 | Banana | nucleus | 44.64 | 80.21 |
| GSMUA_Achr4P28270_001 | Banana | nucleus | 55.65 | 70.85 |
| GSMUA_Achr7P08050_001 | Banana | nucleus | 53.62 | 69.55 |
| CDY34012 | Canola | nucleus | 37.1 | 66.32 |
| GSMUA_Achr2P13200_001 | Banana | nucleus | 62.9 | 61.82 |
| GSMUA_Achr10P... | Banana | nucleus | 46.09 | 61.15 |
| GSMUA_Achr6P04640_001 | Banana | nucleus | 60.0 | 57.98 |
| GSMUA_Achr4P03120_001 | Banana | nucleus | 46.67 | 55.52 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 59.13 | 55.14 |
| GSMUA_Achr3P26230_001 | Banana | nucleus | 50.43 | 54.04 |
| Solyc04g077210.2.1 | Tomato | nucleus | 55.36 | 53.8 |
| PGSC0003DMT400012712 | Potato | nucleus | 55.65 | 53.33 |
| GSMUA_Achr7P27540_001 | Banana | nucleus | 52.75 | 52.0 |
| KRH15482 | Soybean | nucleus | 55.36 | 49.61 |
| KRH61471 | Soybean | nucleus | 51.01 | 48.75 |
| KRG88661 | Soybean | nucleus | 54.49 | 48.58 |
| Bra000638.1-P | Field mustard | nucleus | 53.04 | 47.29 |
| AT4G08150.1 | Thale cress | nucleus | 53.33 | 46.23 |
| CDX83145 | Canola | nucleus | 53.04 | 45.52 |
| GSMUA_Achr11P... | Banana | nucleus | 37.39 | 41.88 |
| GSMUA_Achr8P10550_001 | Banana | nucleus | 37.1 | 41.69 |
| GSMUA_Achr2P00410_001 | Banana | nucleus | 36.52 | 41.31 |
| Zm00001d033861_P001 | Maize | nucleus | 42.32 | 40.56 |
| GSMUA_Achr8P05110_001 | Banana | nucleus | 36.23 | 40.45 |
| OQU91064 | Sorghum | nucleus | 43.19 | 40.16 |
| GSMUA_Achr4P14600_001 | Banana | nucleus | 44.64 | 39.69 |
| CDY68624 | Canola | nucleus | 39.13 | 38.68 |
| Os03t0727200-00 | Rice | nucleus | 40.0 | 37.81 |
| GSMUA_Achr1P03660_001 | Banana | nucleus | 23.77 | 28.18 |
| GSMUA_Achr5P04420_001 | Banana | nucleus | 19.42 | 26.69 |
| GSMUA_Achr3P13370_001 | Banana | nucleus | 25.51 | 24.65 |
| GSMUA_Achr1P26000_001 | Banana | nucleus | 25.8 | 24.12 |
| GSMUA_Achr4P20400_001 | Banana | nucleus | 26.67 | 23.96 |
| GSMUA_Achr7P05170_001 | Banana | nucleus | 26.96 | 23.66 |
| GSMUA_Achr10P... | Banana | nucleus | 26.09 | 22.96 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr4G32230_001 | EnsemblPlants:GSMUA_Achr4P32230_001 | EnsemblPlants:GSMUA_Achr4T32230_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | UniProt:M0STY5 |
| PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 |
| SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI000296B6E7 | SEG:seg | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G32230_001]
Coordinates
chr4:-:29077155..29082566
Molecular Weight (calculated)
39026.0 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.716
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPPYWTES LLHLPSSTTT TTVSSATPPL SAALYDRNYY PTTANSPYLK PPPLKLEASS SLPPSQAREV EGGGGERSAS DIEGIKAKIM SHPRYSNLLG
101: AHLECQKVGA PPEVVARLSA LARELDSRLS YRHKQPSDDP ELDQFMEAYC QMLIRYREEL TRPLQEATEF LEGVESEFNA LTNTCSFRLF SSAEACEGVA
201: SSEEDQDASC GEVGLQEFDP CAEEKELRLH LLKKYGGYLS SLRQELSKKK KNGKLPKDAR QKLLKWWELH YKWPYPSEKE KAALAELTGL DQKQINNWFI
301: NQRKRHWRPS EDMQLMVMDG FHPPNADGLY MEGQFTSDGL YRVGP
101: AHLECQKVGA PPEVVARLSA LARELDSRLS YRHKQPSDDP ELDQFMEAYC QMLIRYREEL TRPLQEATEF LEGVESEFNA LTNTCSFRLF SSAEACEGVA
201: SSEEDQDASC GEVGLQEFDP CAEEKELRLH LLKKYGGYLS SLRQELSKKK KNGKLPKDAR QKLLKWWELH YKWPYPSEKE KAALAELTGL DQKQINNWFI
301: NQRKRHWRPS EDMQLMVMDG FHPPNADGLY MEGQFTSDGL YRVGP
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.