Factsheet for GSMUA_Achr4P14600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P01960_001	Banana	nucleus	28.87	58.33
GSMUA_Achr4P28270_001	Banana	nucleus	39.95	57.2
GSMUA_Achr7P08050_001	Banana	nucleus	38.92	56.77
GSMUA_Achr10P...	Banana	nucleus	32.73	48.85
GSMUA_Achr7P27540_001	Banana	nucleus	42.53	47.14
GSMUA_Achr2P13200_001	Banana	nucleus	42.27	46.72
GSMUA_Achr3P26230_001	Banana	nucleus	38.66	46.58
GSMUA_Achr4P03120_001	Banana	nucleus	34.28	45.86
GSMUA_Achr6P04640_001	Banana	nucleus	41.49	45.1
GSMUA_Achr4P32230_001	Banana	nucleus	39.69	44.64
GSMUA_Achr8P05110_001	Banana	nucleus	33.25	41.75
GSMUA_Achr8P10550_001	Banana	nucleus	32.73	41.37
GSMUA_Achr11P...	Banana	nucleus	32.47	40.91
GSMUA_Achr2P00410_001	Banana	nucleus	30.93	39.34
GSMUA_Achr1P03660_001	Banana	nucleus	19.59	26.12
GSMUA_Achr5P04420_001	Banana	nucleus	16.75	25.9
GSMUA_Achr3P13370_001	Banana	nucleus	23.45	25.49
GSMUA_Achr7P05170_001	Banana	nucleus	24.74	24.43
GSMUA_Achr1P26000_001	Banana	nucleus	22.42	23.58
GSMUA_Achr4P20400_001	Banana	nucleus	23.2	23.44
GSMUA_Achr10P...	Banana	nucleus	23.45	23.21

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	ncoils:Coil	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G14600_001	EnsemblPlants:GSMUA_Achr4P14600_001	EnsemblPlants:GSMUA_Achr4T14600_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
UniProt:M0SNX5	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF203	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI00029613A4	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G14600_001]

Coordinates

chr4:-:10943790..10948410

Molecular Weight (calculated)

42690.9 Da

IEP (calculated)

6.886

GRAVY (calculated)

-0.530

Length

388 amino acids

Sequence
(BLAST)

001: MEELYQVEVY QRDATGLIQT SSPSLAASAT TSKVLTVAAV AAPPAFFHGK AHCWADPLSF TTTHHHPLHL ETSSSSSPQD AFQRRAAASS SDIDTIKASI
101: ISHPQYSSLL SAYVNCQKIG APPAVADRLS ATAGELEARQ RAALSSSHPL TDPDLDRFME AYCQVLVKYK EELTRPVEEA KEFLRRAESQ LNSITDGSLH
201: LLSSDENSGG CSSAEDQEAG GSKTRLPKID QCGEEVELKN FLLKRYSGHM NSLRQELSKK KKKKGKLPKE AIEKLLSWWE LHHKWPYPSE SEKRALAEST
301: GLDQKQISNW FINQRKRHWK PAKDEQFIMT DGYDPSNAAA LHADGGFMSD GRFSNSVWSS TPSSASPVVL VVTLTSGTVE LSSRATLE

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.