Factsheet for GSMUA_Achr5P04420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0292900-01	Rice	nucleus, plasma membrane	66.53	79.15
GSMUA_Achr3P13370_001	Banana	nucleus	67.73	47.62
GSMUA_Achr1P03660_001	Banana	nucleus	54.58	47.08
GSMUA_Achr1P26000_001	Banana	nucleus	64.94	44.17
GSMUA_Achr7P05170_001	Banana	nucleus	66.93	42.75
GSMUA_Achr4P20400_001	Banana	nucleus	64.54	42.19
GSMUA_Achr10P...	Banana	nucleus	65.74	42.09
GSMUA_Achr5P01960_001	Banana	nucleus	25.1	32.81
GSMUA_Achr7P08050_001	Banana	nucleus	27.09	25.56
GSMUA_Achr4P28270_001	Banana	nucleus	27.09	25.09
GSMUA_Achr8P10550_001	Banana	nucleus	29.08	23.78
GSMUA_Achr10P...	Banana	nucleus	24.3	23.46
GSMUA_Achr2P00410_001	Banana	nucleus	27.09	22.3
GSMUA_Achr11P...	Banana	nucleus	27.09	22.08
GSMUA_Achr4P03120_001	Banana	nucleus	25.5	22.07
GSMUA_Achr3P26230_001	Banana	nucleus	26.29	20.5
GSMUA_Achr2P13200_001	Banana	nucleus	27.49	19.66
GSMUA_Achr7P27540_001	Banana	nucleus	27.09	19.43
GSMUA_Achr4P32230_001	Banana	nucleus	26.69	19.42
GSMUA_Achr6P04640_001	Banana	nucleus	26.29	18.49
GSMUA_Achr4P14600_001	Banana	nucleus	25.9	16.75
GSMUA_Achr8P05110_001	Banana	nucleus	17.13	13.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G04420_001
EnsemblPlants:GSMUA_Achr5P04420_001	EnsemblPlants:GSMUA_Achr5T04420_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX2	UniProt:M0SVM1	PFAM:PF03789	PFAM:PF03791	PFAM:PF05920
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122	SMART:SM00389	SMART:SM01188
SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI0002963756	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G04420_001]

Coordinates

chr5:-:3189951..3193594

Molecular Weight (calculated)

28690.0 Da

IEP (calculated)

6.157

GRAVY (calculated)

-0.707

Length

251 amino acids

Sequence
(BLAST)

001: MLELQLILNV FSNQANYVLL LCSFKEQLQQ HVRVHAMDAV MACWELEQNL QSLTGVSPGE GTGATMSDDE EDEADGDVTL FDASLDGTED MGFGLPTERE
101: RSLMERVRQE LKHELKQGYK EKLMDIREEI LRKRRAGKLP GDTTTLLKAW WQSHSKWPYP TEDDKARLVQ QTGLQLKQIN NWFINQRKRN WQSNPSPSTS
201: LKSKRKRCVS IYSQSKAEEL LPPWSKTALA MQDIVGGENR TQFASTAVKS D

Best Arabidopsis Sequence Match ( AT4G32040.1 )
(BLAST)

001: MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS

Arabidopsis Description

KNAT5KNAT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V1Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.