Factsheet for Os08t0292900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P04420_001	Banana	nucleus	79.15	66.53
Os02t0182800-01	Rice	nucleus	80.09	53.99
Os06t0646600-01	Rice	nucleus	81.52	53.25
Os03t0673000-00	Rice	nucleus	18.48	50.65
KRH03552	Soybean	nucleus	82.46	50.43
KRH20116	Soybean	nucleus	82.46	50.29
Solyc12g010410.1.1	Tomato	nucleus	73.93	47.42
KRH37876	Soybean	nucleus	81.52	46.61
KRH12889	Soybean	nucleus	81.52	46.49
PGSC0003DMT400020407	Potato	nucleus	73.46	45.59
Os03t0123500-02	Rice	nucleus	66.82	44.9
VIT_11s0118g00800.t01	Wine grape	nucleus	86.73	42.56
PGSC0003DMT400078990	Potato	nucleus	82.94	42.17
Solyc07g007120.2.1	Tomato	nucleus	82.94	40.6
Os05t0129700-01	Rice	nucleus	35.55	24.12
Os01t0302500-01	Rice	nucleus	33.18	23.26
Os03t0727000-02	Rice	nucleus	35.55	20.78
Os07t0129700-01	Rice	nucleus	34.6	20.56
Os03t0771500-01	Rice	nucleus	30.81	19.35
Os03t0727200-00	Rice	nucleus	31.28	18.08
Os03t0673500-00	Rice	nucleus	27.96	17.15
Os03t0772100-00	Rice	vacuole	29.86	15.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	UniProt:A0A0P0XEB4	ProteinID:BAT04768.1	InterPro:ELK_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
InterPro:KNOX2	EnsemblPlantsGene:Os08g0292900	EnsemblPlants:Os08t0292900-01	PFAM:PF03789	PFAM:PF03791	PFAM:PF05920
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122	SMART:SM00389	SMART:SM01188
SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI0000DD948F	SEG:seg	:	:

Description

HOMEOBOX45Similar to Isoform 2 of Homeobox protein knotted-1-like 13. (Os08t0292900-01)

Coordinates

chr8:+:11758735..11765193

Molecular Weight (calculated)

23978.1 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.927

Length

211 amino acids

Sequence
(BLAST)

001: GGDAAAAGDD GRELDQFMTH YVLLLCSFKE QLQQHVRVHA MEAVMACWEL EQNLQSLTGA SPGEGTGATM SDGEDDQADS EANMYDPSLD GADNMGFGLP
101: TESERSLMER VRQELKHELK QGYKEKLIDI REEILRKRRA GKLPGDTTST LKAWWQSHAK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS
201: SSTSVKTKRK R

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.