Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0673000-00 | Rice | nucleus | 16.16 | 76.62 |
| Zm00001d033861_P001 | Maize | nucleus | 65.21 | 66.11 |
| OQU91064 | Sorghum | nucleus | 66.58 | 65.5 |
| GSMUA_Achr5P01960_001 | Banana | nucleus | 30.14 | 57.29 |
| CDY34012 | Canola | nucleus | 29.86 | 56.48 |
| GSMUA_Achr4P28270_001 | Banana | nucleus | 36.99 | 49.82 |
| GSMUA_Achr7P08050_001 | Banana | nucleus | 35.07 | 48.12 |
| Os07t0129700-01 | Rice | nucleus | 43.01 | 44.23 |
| GSMUA_Achr2P13200_001 | Banana | nucleus | 41.92 | 43.59 |
| Os03t0727000-02 | Rice | nucleus | 42.74 | 43.21 |
| GSMUA_Achr6P04640_001 | Banana | nucleus | 42.19 | 43.14 |
| Solyc04g077210.2.1 | Tomato | nucleus | 40.55 | 41.69 |
| PGSC0003DMT400012712 | Potato | nucleus | 40.82 | 41.39 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 41.1 | 40.54 |
| Os01t0302500-01 | Rice | nucleus | 33.15 | 40.2 |
| GSMUA_Achr4P32230_001 | Banana | nucleus | 37.81 | 40.0 |
| KRH61471 | Soybean | nucleus | 39.45 | 39.89 |
| Bra000638.1-P | Field mustard | nucleus | 41.92 | 39.53 |
| AT4G08150.1 | Thale cress | nucleus | 42.19 | 38.69 |
| KRH15482 | Soybean | nucleus | 40.55 | 38.44 |
| CDX83145 | Canola | nucleus | 41.92 | 38.06 |
| KRG88661 | Soybean | nucleus | 40.27 | 37.98 |
| Os03t0771500-01 | Rice | nucleus | 33.97 | 36.9 |
| Os05t0129700-01 | Rice | nucleus | 30.68 | 36.01 |
| Os03t0673500-00 | Rice | nucleus | 32.33 | 34.3 |
| CDY68624 | Canola | nucleus | 31.23 | 32.66 |
| Os08t0292900-01 | Rice | nucleus, plasma membrane | 18.08 | 31.28 |
| Os06t0646600-01 | Rice | nucleus | 24.11 | 27.24 |
| Os02t0182800-01 | Rice | nucleus | 23.29 | 27.16 |
| Os03t0772100-00 | Rice | vacuole | 29.86 | 26.2 |
| Os03t0123500-02 | Rice | nucleus | 19.73 | 22.93 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | ProteinID:BAS86186.1 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 |
| InterPro:KNOX1 | InterPro:KNOX2 | EnsemblPlantsGene:Os03g0727200 | EnsemblPlants:Os03t0727200-00 | PFAM:PF03789 | PFAM:PF03790 |
| PFAM:PF03791 | PFAM:PF05920 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF87 |
| SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI0000E121E8 |
| SEG:seg | : | : | : | : | : |
Description
HOMEOBOX 3Similar to HOS13 protein (Fragment). (Os03t0727200-00)
Coordinates
chr3:-:29626761..29632749
Molecular Weight (calculated)
39959.2 Da
IEP (calculated)
5.995
GRAVY (calculated)
-0.566
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELEGHRGE GRLPPPPPLL PFPKVSVQVY TVPSSSTAAS AAAAGGARQA VAPATRDGGD GGGRAAGVLD DPVKARIVSH PRYHRLLAAF LDCHKVGCPA
101: EAAEEIAAAA RVREARQRAA AAASRMPPAP EDPELKLVTE DYCKLLVECK EELSRPLQEA EEFLRTVESE LNSINSGPPL TALISESKAG LDSSDDDEHE
201: DGSGMEMMEA AEDEDLGIID PRSDDKALKR HLLRKYSGYL GGLRKELSKK RKKGKLPKEA RQKLLTWWEL HYRWPNPSEM EKIALAESTG LEQKQINNCF
301: INQRKRHWKP TEEMEFAVME AYHHQSTDAA AAFYVDVDAR LVGATAAAPA SAVYTARPDH GVWRA
101: EAAEEIAAAA RVREARQRAA AAASRMPPAP EDPELKLVTE DYCKLLVECK EELSRPLQEA EEFLRTVESE LNSINSGPPL TALISESKAG LDSSDDDEHE
201: DGSGMEMMEA AEDEDLGIID PRSDDKALKR HLLRKYSGYL GGLRKELSKK RKKGKLPKEA RQKLLTWWEL HYRWPNPSEM EKIALAESTG LEQKQINNCF
301: INQRKRHWKP TEEMEFAVME AYHHQSTDAA AAFYVDVDAR LVGATAAAPA SAVYTARPDH GVWRA
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.