Factsheet for GSMUA_Achr5P01960_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P01700_001
GSMUA_Achr1P03660_001
GSMUA_Achr1P03680_001
GSMUA_Achr1P03740_001
GSMUA_Achr1P06400_001
GSMUA_Achr1P18320_001
GSMUA_Achr1P23300_001
GSMUA_Achr2P04310_001
GSMUA_Achr2P06420_001
GSMUA_Achr2P10020_001
GSMUA_Achr3P09850_001
GSMUA_Achr3P29230_001
GSMUA_Achr4P04480_001
GSMUA_Achr4P06630_001
GSMUA_Achr4P12180_001
GSMUA_Achr4P13590_001
GSMUA_Achr4P20870_001
GSMUA_Achr4P22090_001
GSMUA_Achr4P27010_001
GSMUA_Achr4P30380_001
GSMUA_Achr5P07020_001
GSMUA_Achr5P13520_001
GSMUA_Achr5P14740_001
GSMUA_Achr5P15290_001
GSMUA_Achr5P20250_001
GSMUA_Achr6P18350_001
GSMUA_Achr6P19470_001
GSMUA_Achr7P01890_001
GSMUA_Achr7P07110_001
GSMUA_Achr7P14960_001
GSMUA_Achr8P12190_001
GSMUA_Achr8P29370_001
GSMUA_Achr9P02660_001
GSMUA_Achr9P18740_001
GSMUA_Achr9P21580_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	GSMUA_Achr3P09850_001	AT1G06920.1	15781858
AT4G08150.1	GSMUA_Achr8P29370_001	AT1G22630.1	21798944
AT4G08150.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT4G08150.1	GSMUA_Achr1P23300_001	AT2G16400.1	15781858
AT4G08150.1	GSMUA_Achr2P06420_001	AT2G16400.1	15781858
AT4G08150.1	GSMUA_Achr3P29230_001	AT2G16400.1	15781858
AT4G08150.1	GSMUA_Achr4P06630_001	AT2G16400.1	15781858
AT4G08150.1	GSMUA_Achr4P13590_001	AT2G16400.1	15781858
AT4G08150.1	GSMUA_Achr9P21580_001	AT2G16400.1	15781858
AT4G08150.1	GSMUA_Achr4P20870_001	AT2G22680.1	21798944
AT4G08150.1	GSMUA_Achr4P22090_001	AT2G22680.1	21798944
AT4G08150.1	GSMUA_Achr5P14740_001	AT2G22680.1	21798944
AT4G08150.1	GSMUA_Achr7P01890_001	AT2G22680.1	21798944
AT4G08150.1	GSMUA_Achr10P...	AT2G27990.1	15781858
AT4G08150.1	GSMUA_Achr11P...	AT2G27990.1	15781858
AT4G08150.1	GSMUA_Achr3P09850_001	AT2G30400.1	15781858
AT4G08150.1	GSMUA_Achr11P...	AT3G52525.1	15781858
AT4G08150.1	GSMUA_Achr1P03740_001	AT3G52525.1	15781858
AT4G08150.1	GSMUA_Achr5P20250_001	AT3G52525.1	15781858
AT4G08150.1	GSMUA_Achr6P18350_001	AT3G52525.1	15781858
AT4G08150.1	GSMUA_Achr6P19470_001	AT3G52525.1	15781858
AT4G08150.1	GSMUA_Achr8P12190_001	AT3G52525.1	15781858
AT4G08150.1	GSMUA_Achr9P02660_001	AT3G52525.1	15781858
AT4G08150.1	GSMUA_AchrUn_...	AT3G52525.1	15781858
AT4G08150.1	GSMUA_Achr1P01700_001	AT4G12450.1	21798944
AT4G08150.1	GSMUA_Achr2P10020_001	AT4G12450.1	21798944
AT4G08150.1	GSMUA_Achr4P27010_001	AT4G12450.1	21798944
AT4G08150.1	GSMUA_Achr4P30380_001	AT4G12450.1	21798944
AT4G08150.1	GSMUA_Achr5P13520_001	AT4G12450.1	21798944
AT4G08150.1	GSMUA_Achr5P15290_001	AT4G12450.1	21798944
AT4G08150.1	GSMUA_Achr7P07110_001	AT4G12450.1	21798944
AT4G08150.1	GSMUA_Achr10P...	AT5G02030.1	12897247
AT4G08150.1	GSMUA_Achr10P...	AT5G02030.1	12897247
AT4G08150.1	GSMUA_Achr5P07020_001	AT5G02030.1	12897247
AT4G08150.1	GSMUA_Achr7P14960_001	AT5G02030.1	12897247
AT4G08150.1	GSMUA_Achr10P...	AT5G02030.1	15019989
AT4G08150.1	GSMUA_Achr10P...	AT5G02030.1	15019989
AT4G08150.1	GSMUA_Achr5P07020_001	AT5G02030.1	15019989
AT4G08150.1	GSMUA_Achr7P14960_001	AT5G02030.1	15019989
AT4G08150.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT4G08150.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT4G08150.1	GSMUA_Achr5P07020_001	AT5G02030.1	15781858
AT4G08150.1	GSMUA_Achr7P14960_001	AT5G02030.1	15781858
AT4G08150.1	GSMUA_Achr1P03680_001	AT5G41410.1	11701881
AT4G08150.1	GSMUA_Achr1P06400_001	AT5G41410.1	11701881
AT4G08150.1	GSMUA_Achr2P04310_001	AT5G41410.1	11701881
AT4G08150.1	GSMUA_Achr4P04480_001	AT5G41410.1	11701881
AT4G08150.1	GSMUA_Achr4P12180_001	AT5G41410.1	11701881
AT4G08150.1	GSMUA_Achr9P18740_001	AT5G41410.1	11701881
AT4G08150.1	GSMUA_Achr1P03680_001	AT5G41410.1	15781858
AT4G08150.1	GSMUA_Achr1P06400_001	AT5G41410.1	15781858
AT4G08150.1	GSMUA_Achr2P04310_001	AT5G41410.1	15781858
AT4G08150.1	GSMUA_Achr4P04480_001	AT5G41410.1	15781858
AT4G08150.1	GSMUA_Achr4P12180_001	AT5G41410.1	15781858
AT4G08150.1	GSMUA_Achr9P18740_001	AT5G41410.1	15781858
AT4G08150.1	GSMUA_Achr1P03680_001	AT5G41410.1	17873098
AT4G08150.1	GSMUA_Achr1P06400_001	AT5G41410.1	17873098
AT4G08150.1	GSMUA_Achr2P04310_001	AT5G41410.1	17873098
AT4G08150.1	GSMUA_Achr4P04480_001	AT5G41410.1	17873098
AT4G08150.1	GSMUA_Achr4P12180_001	AT5G41410.1	17873098
AT4G08150.1	GSMUA_Achr9P18740_001	AT5G41410.1	17873098
AT4G08150.1	GSMUA_Achr1P18320_001	AT5G50100.1	21798944
AT4G08150.1	GSMUA_AchrUn_...	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34012	Canola	nucleus	68.75	68.39
GSMUA_Achr4P28270_001	Banana	nucleus	80.73	57.2
GSMUA_Achr7P08050_001	Banana	nucleus	76.04	54.89
GSMUA_Achr10P...	Banana	nucleus	65.62	48.46
GSMUA_Achr4P32230_001	Banana	nucleus	80.21	44.64
GSMUA_Achr2P13200_001	Banana	nucleus	81.25	44.44
GSMUA_Achr4P03120_001	Banana	nucleus	65.62	43.45
GSMUA_Achr3P26230_001	Banana	nucleus	69.79	41.61
GSMUA_Achr6P04640_001	Banana	nucleus	76.04	40.9
Solyc04g077210.2.1	Tomato	nucleus	73.96	40.0
VIT_18s0001g08380.t01	Wine grape	nucleus	76.04	39.46
PGSC0003DMT400012712	Potato	nucleus	73.44	39.17
GSMUA_Achr7P27540_001	Banana	nucleus	68.23	37.43
KRH15482	Soybean	nucleus	75.0	37.4
KRH61471	Soybean	nucleus	69.27	36.84
KRG88661	Soybean	nucleus	73.96	36.69
Bra000638.1-P	Field mustard	nucleus	71.35	35.4
AT4G08150.1	Thale cress	nucleus	70.83	34.17
CDX83145	Canola	nucleus	71.35	34.08
GSMUA_Achr8P10550_001	Banana	nucleus	49.48	30.94
Zm00001d033861_P001	Maize	nucleus	57.81	30.83
GSMUA_Achr11P...	Banana	nucleus	48.96	30.52
OQU91064	Sorghum	nucleus	58.85	30.46
Os03t0727200-00	Rice	nucleus	57.29	30.14
GSMUA_Achr2P00410_001	Banana	nucleus	46.88	29.51
GSMUA_Achr4P14600_001	Banana	nucleus	58.33	28.87
GSMUA_Achr8P05110_001	Banana	nucleus	43.75	27.18
GSMUA_Achr5P04420_001	Banana	nucleus	32.81	25.1
CDY68624	Canola	nucleus	43.75	24.07
GSMUA_Achr1P03660_001	Banana	nucleus	28.12	18.56
GSMUA_Achr3P13370_001	Banana	nucleus	30.73	16.53
GSMUA_Achr1P26000_001	Banana	nucleus	31.25	16.26
GSMUA_Achr7P05170_001	Banana	nucleus	31.25	15.27
GSMUA_Achr4P20400_001	Banana	nucleus	30.21	15.1
GSMUA_Achr10P...	Banana	nucleus	30.73	15.05

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_Achr5G01960_001	EnsemblPlants:GSMUA_Achr5P01960_001	EnsemblPlants:GSMUA_Achr5T01960_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX2	UniProt:M0SUX5	PFAM:PF03789
PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF203	SMART:SM00389	SMART:SM01188	SUPFAM:SSF46689	UniParc:UPI0002957D8A	SEG:seg

Description

Homeotic protein knotted-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01960_001]

Coordinates

chr5:+:1199521..1204579

Molecular Weight (calculated)

22463.6 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.898

Length

192 amino acids

Sequence
(BLAST)

001: MRYRVELTRP FQEAMDFLKT VESQFNALTN TSSLRLFSSD ERCEDVASSE EDPDASGGEA DILEIDPRAE DKELKHHLLK KYSGYLSSLR QELSKKRKKG
101: KLPKEARQKL LKWWELHYKW PYPSESEKLA LAESTGLDQK QINNWFINQR KRHWRPSEDM QLMVMDGFHP QNAAALYMEG HFMGDGLYHV GP

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.