Factsheet for GSMUA_Achr5P13520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P25070_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P27170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	GSMUA_Achr7P27170_001	AT1G05410.1	21798944
AT4G12450.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P27010_001	Banana	plastid	71.19	73.43
GSMUA_Achr1P01700_001	Banana	nucleus	73.22	73.22
GSMUA_Achr2P10020_001	Banana	cytosol	66.44	73.13
GSMUA_Achr5P15290_001	Banana	nucleus	62.71	72.83
GSMUA_Achr4P30380_001	Banana	cytosol	66.78	69.61
GSMUA_Achr7P07110_001	Banana	cytosol	57.63	61.59
Os10t0554001-01	Rice	cytosol	35.25	57.14
TraesCS5A01G536800.1	Wheat	cytosol	35.59	54.69
Solyc08g079010.1.1	Tomato	cytosol	24.41	45.57
TraesCS6A01G248100.1	Wheat	plastid	42.71	45.49
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	44.75	44.9
TraesCS6D01G230200.1	Wheat	plastid	42.37	44.64
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	43.73	44.64
HORVU6Hr1G063400.2	Barley	plastid	42.37	44.48
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	44.07	44.37
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	43.73	44.03
CDX76365	Canola	cytosol	38.31	43.8
Bra020842.1-P	Field mustard	cytosol	38.31	43.8
Zm00001d047106_P001	Maize	plastid	43.73	43.58
TraesCS6B01G276600.1	Wheat	plastid	41.36	43.57
AT4G22560.1	Thale cress	cytosol, plastid	38.98	43.56
CDY42181	Canola	cytosol	37.97	43.41
VIT_02s0154g00220.t01	Wine grape	cytosol	41.69	43.01
Zm00001d029869_P001	Maize	mitochondrion	44.41	42.67
KXG38947	Sorghum	mitochondrion	46.1	42.5
Zm00001d017504_P001	Maize	mitochondrion	42.03	42.32
KRH77393	Soybean	mitochondrion	40.34	41.9
AT4G12450.1	Thale cress	cytosol	39.32	41.88
KRH28045	Soybean	mitochondrion	40.34	41.75
KRH57359	Soybean	cytosol	40.34	41.61
Os02t0661600-00	Rice	mitochondrion	43.05	41.5
Bra029455.1-P	Field mustard	cytosol	38.64	41.01
CDY16714	Canola	cytosol	38.64	41.01
CDY63658	Canola	cytosol	38.64	41.01
TraesCS4D01G361200.1	Wheat	plastid	42.37	40.58
KRH04088	Soybean	cytosol	39.66	40.21
CDY12954	Canola	nucleus	35.93	40.15
AT1G62520.1	Thale cress	nucleus	37.97	40.0
Bra027038.1-P	Field mustard	cytosol, plastid	35.59	39.77
CDY19564	Canola	nucleus	35.59	39.77
KXG31078	Sorghum	plastid	42.03	39.24
TraesCS4B01G369900.1	Wheat	plastid	41.36	38.98
PGSC0003DMT400012224	Potato	nucleus	38.98	38.46
GSMUA_Achr6P19070_001	Banana	cytosol	13.9	31.06
GSMUA_Achr11P...	Banana	nucleus	25.76	29.23
GSMUA_Achr6P17990_001	Banana	nucleus	23.39	26.85
KRH37293	Soybean	plastid	13.56	25.97
GSMUA_Achr11P...	Banana	cytosol	22.37	24.44
GSMUA_Achr9P00350_001	Banana	nucleus	22.71	23.51
GSMUA_Achr7P19590_001	Banana	cytosol	6.78	23.26
GSMUA_Achr6P24320_001	Banana	cytosol	26.44	23.15
GSMUA_AchrUn_...	Banana	cytosol	27.8	22.78
GSMUA_Achr8P19240_001	Banana	nucleus	30.51	21.33
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	27.8	21.3
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	26.78	21.29
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	23.39	20.85
GSMUA_Achr9P24720_001	Banana	cytosol	25.42	20.78
GSMUA_Achr9P29950_001	Banana	cytosol	25.76	20.27
GSMUA_Achr8P30300_001	Banana	nucleus	25.76	19.69
GSMUA_Achr1P08590_001	Banana	nucleus	27.8	19.66
GSMUA_Achr11P...	Banana	nucleus	30.51	19.61
GSMUA_Achr6P19060_001	Banana	nucleus	11.53	15.04

Protein Annotations

EnsemblPlants:GSMUA_Achr5P13520_001	EnsemblPlants:GSMUA_Achr5T13520_001	EnsemblPlantsGene:GSMUA_Achr5G13520_001	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12
SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002957CA1	UniProt:M0SY81	MapMan:15.5.15	:

Description

zinc finger protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr5G13520_001]

Coordinates

chr5:-:9723348..9724235

Molecular Weight (calculated)

31025.1 Da

IEP (calculated)

10.169

GRAVY (calculated)

-0.085

Length

295 amino acids

Sequence
(BLAST)

001: MATGWLKSLH CKSKAVEDVY PLAPSASSSS STKKPLLSSV VCGNTYHAVE DVVFLLLKHP SFRSTASSVP KRPRQRTRPK SRHIPRPARP CASAASASMP
101: DGLVGPVHAD PFRTLVELPM GHSSRRVVEI IFSSTWSSSG GGGGGAVAAE IEMLFRVHNP ARTVARFEEH RATVRARAAR SNDARCAADG NEMMRFQCGA
201: AGGLVYDAGV ARSVVWSAGM KVEGVRTFAG SGGAHASGGG GAGRKSMLVC RVIAGRVRGE SDHEAEAESV SLGNGELVVF DPGAVLPCFL VIYNL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.