Factsheet for VIT_02s0154g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00210.t01
VIT_05s0020g03600.t01
VIT_07s0031g02330.t01
VIT_07s0129g01050.t01
VIT_07s0130g00490.t01
VIT_16s0098g00600.t01
VIT_16s0115g00130.t01
VIT_18s0001g09850.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	VIT_05s0020g03600.t01	AT1G05410.1	21798944
AT4G12450.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT4G12450.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT4G12450.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT4G12450.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT4G12450.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT4G12450.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT4G12450.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT4G12450.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079010.1.1	Tomato	cytosol	43.01	77.85
KRH28045	Soybean	mitochondrion	68.53	68.77
PGSC0003DMT400012224	Potato	nucleus	70.98	67.89
KRH77393	Soybean	mitochondrion	65.38	65.85
KRH57359	Soybean	cytosol	62.59	62.59
KRH04088	Soybean	cytosol	63.64	62.54
AT1G62520.1	Thale cress	nucleus	58.74	60.0
CDY19564	Canola	nucleus	55.24	59.85
CDY12954	Canola	nucleus	54.2	58.71
Bra027038.1-P	Field mustard	cytosol, plastid	53.5	57.95
CDY42181	Canola	cytosol	51.4	56.98
CDX76365	Canola	cytosol	51.4	56.98
Bra020842.1-P	Field mustard	cytosol	51.4	56.98
AT4G22560.1	Thale cress	cytosol, plastid	52.1	56.44
CDY16714	Canola	cytosol	53.85	55.4
Bra029455.1-P	Field mustard	cytosol	53.85	55.4
CDY63658	Canola	cytosol	53.15	54.68
AT4G12450.1	Thale cress	cytosol	52.8	54.51
GSMUA_Achr5P15290_001	Banana	nucleus	44.06	49.61
Os10t0554001-01	Rice	cytosol	31.12	48.9
GSMUA_Achr2P10020_001	Banana	cytosol	45.8	48.88
GSMUA_Achr7P07110_001	Banana	cytosol	45.45	47.1
GSMUA_Achr4P27010_001	Banana	plastid	46.85	46.85
GSMUA_Achr1P01700_001	Banana	nucleus	48.25	46.78
GSMUA_Achr4P30380_001	Banana	cytosol	44.76	45.23
KRH37293	Soybean	plastid	22.73	42.21
TraesCS5A01G536800.1	Wheat	cytosol	28.32	42.19
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	43.01	41.69
HORVU6Hr1G063400.2	Barley	plastid	40.91	41.64
TraesCS6A01G248100.1	Wheat	plastid	40.21	41.52
TraesCS6D01G230200.1	Wheat	plastid	39.86	40.71
TraesCS6B01G276600.1	Wheat	plastid	39.86	40.71
Zm00001d017504_P001	Maize	mitochondrion	41.61	40.61
KXG31078	Sorghum	plastid	42.31	38.29
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	38.11	37.72
Os02t0661600-00	Rice	mitochondrion	40.21	37.58
Zm00001d047106_P001	Maize	plastid	38.46	37.16
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	38.11	37.07
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	37.41	36.52
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	37.41	36.52
Zm00001d029869_P001	Maize	mitochondrion	39.16	36.48
KXG38947	Sorghum	mitochondrion	38.81	34.69
TraesCS4D01G361200.1	Wheat	plastid	34.62	32.14
TraesCS4B01G369900.1	Wheat	plastid	34.97	31.95
VIT_08s0040g02390.t01	Wine grape	plasma membrane	18.18	30.41
VIT_19s0090g01730.t01	Wine grape	cytosol	18.18	27.66
VIT_00s1356g00010.t01	Wine grape	cytosol	35.31	26.17
VIT_06s0004g06240.t01	Wine grape	plastid	30.07	25.83
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	37.06	24.71
VIT_18s0001g14130.t01	Wine grape	vacuole	34.97	23.87
VIT_18s0001g03670.t01	Wine grape	nucleus	34.27	20.04
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	23.08	19.58

Protein Annotations

EntrezGene:100257409	wikigene:100257409	MapMan:15.5.15	Gene3D:3.90.228.10	EMBL:AM425227	ProteinID:CAN64504
ProteinID:CAN64504.1	ProteinID:CCB56503	ProteinID:CCB56503.1	UniProt:F6HP97	EMBL:FN596001	EntrezGene:LOC100257409
wikigene:LOC100257409	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12	SUPFAM:SSF56399	UniParc:UPI000210828E	ArrayExpress:VIT_02s0154g00220
EnsemblPlantsGene:VIT_02s0154g00220	EnsemblPlants:VIT_02s0154g00220.t01	unigene:Vvi.21742	RefSeq:XP_002265516	RefSeq:XP_002265516.2	SEG:seg

Description

No Description!

Coordinates

chr2:-:5025223..5026178

Molecular Weight (calculated)

30819.0 Da

IEP (calculated)

10.412

GRAVY (calculated)

-0.391

Length

286 amino acids

Sequence
(BLAST)

001: MAAHWVKSLQ CKSKAFEDVY HPNPKNLIPG ASCRKGVQSL KDVIETTKHK PRKPKPPAPK QPSSSRHQRS PKPEPGSAPV SRARQSVSAR PARPAAPFFP
101: ALAEMPEGHP SRNVVEIIFH TSWSPKAFSG RIEMIFKVQN LPRTVTRFEE YREMVKSRAG SGGGTWEDDA RCVADGNEVM RFHCLGPTSG GVYDGGAAAW
201: VFPGGKGSAI CTFSGSGGAH ESGGGGRGRR AMLVCRVIAG RVSKQIGLDS LLEGRVGFDS VSGDNGELLV FDPRAVLPCF LIIYKL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.