Factsheet for VIT_18s0001g02000.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g03670.t01	Wine grape	nucleus	80.12	55.21
PGSC0003DMT400074652	Potato	plastid	51.04	53.42
GSMUA_Achr9P00350_001	Banana	nucleus	43.32	51.23
GSMUA_Achr11P...	Banana	cytosol	40.95	51.11
KRH64726	Soybean	nucleus	64.09	50.7
KRH53192	Soybean	nucleus	63.2	50.35
GSMUA_Achr6P17990_001	Banana	nucleus	37.98	49.81
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	46.88	47.73
Solyc11g013220.1.1	Tomato	nucleus	53.71	44.91
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	49.85	43.64
GSMUA_Achr8P30300_001	Banana	nucleus	48.66	42.49
VIT_18s0001g14130.t01	Wine grape	vacuole	42.43	34.13
Os11t0169400-01	Rice	nucleus	43.03	34.12
Zm00001d004822_P001	Maize	nucleus, plastid	33.53	32.38
TraesCS4D01G108700.1	Wheat	nucleus	41.54	32.04
Zm00001d053006_P001	Maize	nucleus	40.06	31.84
TraesCS4A01G207500.1	Wheat	nucleus	40.95	31.8
HORVU4Hr1G019890.1	Barley	nucleus	40.36	31.63
KXG27839	Sorghum	nucleus, plastid	42.14	31.56
TraesCS4B01G111000.1	Wheat	nucleus	40.65	31.35
VIT_06s0004g06240.t01	Wine grape	plastid	29.97	30.33
VIT_00s1356g00010.t01	Wine grape	cytosol	32.05	27.98
VIT_19s0090g01730.t01	Wine grape	cytosol	14.84	26.6
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	33.83	26.57
VIT_02s0154g00220.t01	Wine grape	cytosol	19.58	23.08
VIT_08s0040g02390.t01	Wine grape	plasma membrane	9.2	18.13

Protein Annotations

EntrezGene:100252363	wikigene:100252363	MapMan:15.5.15	Gene3D:3.90.228.10	ProteinID:CCB45462	ProteinID:CCB45462.1
UniProt:F6H0J0	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100252363	wikigene:LOC100252363	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21
SUPFAM:SSF56399	UniParc:UPI0002109D30	ArrayExpress:VIT_18s0001g02000	EnsemblPlantsGene:VIT_18s0001g02000	EnsemblPlants:VIT_18s0001g02000.t01	RefSeq:XP_002284581
RefSeq:XP_002284581.2	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:2438485..2442668

Molecular Weight (calculated)

36307.5 Da

IEP (calculated)

10.272

GRAVY (calculated)

-0.461

Length

337 amino acids

Sequence
(BLAST)

001: MKCSGSLRSN SKVMPRPEMS SPEDHKKRTS MASSNNDGSS RSMKAPLSEL NGVVSSTSSS LSASSNSSFG GSFKGMPLRR LSGCYECRMV VDPVLGITRD
101: PSLRTTICSC PDCGEIFMKA EILELHQAVR HAVSEPGPED TSKNTVEIIF QSNWLKKQAP VILKVHNTPK TISKFEEYRD SNKTKATKLP KKHPRCVADG
201: NERLRFHCTT FVCSIGLNGS SNLCNSIPSC NICSIIKNGF KVAGGVPGKR ILTTATSGKA RDSARMSSPD GKVKRAMLVC RVTSHVDFSR SNGLSAVGNY
301: YQQEMGGATC IQDGGVRTRG GGVWTRGDKV RTRGGGV

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.