Factsheet for VIT_18s0001g14130.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 3
extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05942	Soybean	nucleus	74.7	75.06
KRH17425	Soybean	nucleus	73.75	74.64
PGSC0003DMT400025521	Potato	plastid	53.46	71.34
Solyc04g081370.2.1	Tomato	extracellular, vacuole	75.42	70.07
CDX73189	Canola	nucleus	69.69	68.07
CDY47503	Canola	nucleus	70.64	67.89
AT1G75710.1	Thale cress	nucleus	72.31	65.58
GSMUA_Achr11P...	Banana	nucleus	40.57	65.38
CDY13543	Canola	nucleus	67.3	65.28
Bra015824.1-P	Field mustard	nucleus	71.84	65.01
CDY39052	Canola	nucleus	68.74	64.57
Bra008218.1-P	Field mustard	nucleus	68.02	63.9
TraesCS2A01G004600.1	Wheat	nucleus	41.53	51.48
GSMUA_Achr8P19240_001	Banana	nucleus	49.4	49.05
GSMUA_Achr11P...	Banana	nucleus	52.51	47.93
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	34.13	42.43
VIT_18s0001g03670.t01	Wine grape	nucleus	48.93	41.92
Os04t0115500-00	Rice	nucleus	47.97	41.88
Zm00001d004497_P001	Maize	nucleus, plastid	45.82	41.83
TraesCSU01G012300.1	Wheat	nucleus, plastid	47.49	41.03
TraesCS2D01G004200.1	Wheat	nucleus, plastid	47.49	40.53
VIT_00s1356g00010.t01	Wine grape	cytosol	37.23	40.41
Zm00001d024883_P001	Maize	nucleus	47.73	39.06
VIT_06s0004g06240.t01	Wine grape	plastid	30.07	37.84
EES10376	Sorghum	nucleus	48.69	37.64
VIT_19s0014g05000.t01	Wine grape	cytosol, plastid	38.42	37.53
VIT_08s0040g02390.t01	Wine grape	plasma membrane	14.56	35.67
VIT_02s0154g00220.t01	Wine grape	cytosol	23.87	34.97
VIT_19s0090g01730.t01	Wine grape	cytosol	15.04	33.51

Protein Annotations

EntrezGene:100250572	wikigene:100250572	MapMan:15.5.15	Gene3D:3.90.228.10	ProteinID:CCB46029	ProteinID:CCB46029.1
UniProt:F6H081	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100250572	wikigene:LOC100250572	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31681	PANTHER:PTHR31681:SF22
SUPFAM:SSF56399	SignalP:SignalP-noTM	TIGR:TC62602	TMHMM:TMhelix	UniParc:UPI000198519F	ArrayExpress:VIT_18s0001g14130
EnsemblPlantsGene:VIT_18s0001g14130	EnsemblPlants:VIT_18s0001g14130.t01	unigene:Vvi.19258	RefSeq:XP_002276294	RefSeq:XP_002276294.1	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:12179540..12181647

Molecular Weight (calculated)

45787.5 Da

IEP (calculated)

9.189

GRAVY (calculated)

-0.431

Length

419 amino acids

Sequence
(BLAST)

001: MKERGSSATL LFFYLLGLLF MALLTFLPEA SETNTKKQQP SKRKRKQQKQ PSSWNQIKNL LTCKQIEGSQ VHDPSKNPGG YSKLGSSCGS ICSFRDVVHG
101: NTRVVHRADN SPESSSVGQE TGLLSRKTVS GSTSSTRSLS SSVRSNASAT YTSSSRGMQF RKLSGCYECH MIVDPNRYPS PRTTICACSE CGEVFPKTES
201: LELHQAVRHA VSELGPEDSG RNIVEIIFKS SWLKKDNPIC KIERILKVHN TQRTIQRFEE CRDAVKVRAN NNTKKNPRCA ADGNELLRFH CTTLTCALGS
301: RGSSSLCGSV PGCGVCTIIR HGFQGKAGEA KGVRTTDSSG RAHDCLPCTD GRRAMLVCRV IAGRVKRMAD DAPDEDGASA GSYDSVAGYS GIYSNLEDLF
401: VFNPRAILPC FVVIYKALD

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.