Factsheet for GSMUA_Achr8P19240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	49.05	79.62
GSMUA_Achr11P...	Banana	nucleus	80.33	73.86
TraesCS2A01G004600.1	Wheat	nucleus	43.84	54.73
PGSC0003DMT400025521	Potato	plastid	40.52	54.46
GSMUA_Achr6P17990_001	Banana	nucleus	31.04	50.97
GSMUA_Achr11P...	Banana	cytosol	32.23	50.37
Zm00001d004497_P001	Maize	nucleus, plastid	54.5	50.11
Os04t0115500-00	Rice	nucleus	56.87	50.0
VIT_18s0001g14130.t01	Wine grape	vacuole	49.05	49.4
KRH17425	Soybean	nucleus	47.63	48.55
KRH05942	Soybean	nucleus	47.87	48.44
CDX73189	Canola	nucleus	47.87	47.09
TraesCSU01G012300.1	Wheat	nucleus, plastid	54.03	47.01
GSMUA_Achr9P00350_001	Banana	nucleus	31.52	46.67
TraesCS2D01G004200.1	Wheat	nucleus, plastid	54.27	46.64
CDY47503	Canola	nucleus	47.63	46.1
CDY20903	Canola	nucleus, plastid	45.5	45.82
Bra014094.1-P	Field mustard	plastid	45.26	45.69
CDY06723	Canola	nucleus, plastid	45.02	45.35
Bra015598.1-P	Field mustard	plastid	45.02	45.35
Zm00001d024883_P001	Maize	nucleus	54.98	45.31
CDY13543	Canola	nucleus	45.73	44.68
AT1G75710.1	Thale cress	nucleus	48.82	44.59
Solyc04g081370.2.1	Tomato	extracellular, vacuole	47.63	44.57
GSMUA_Achr6P19070_001	Banana	cytosol	13.74	43.94
EES10376	Sorghum	nucleus	56.16	43.73
Bra015824.1-P	Field mustard	nucleus	47.87	43.63
CDY39052	Canola	nucleus	45.97	43.5
Bra008218.1-P	Field mustard	nucleus	45.73	43.27
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	33.41	42.6
CDY16999	Canola	nucleus, plastid	41.47	42.27
CDY17799	Canola	nucleus, plastid	42.89	41.71
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	37.2	40.78
GSMUA_Achr7P19590_001	Banana	cytosol	8.29	40.7
GSMUA_Achr8P30300_001	Banana	nucleus	36.97	40.41
GSMUA_Achr6P24320_001	Banana	cytosol	29.62	37.09
GSMUA_Achr7P07110_001	Banana	cytosol	23.93	36.59
GSMUA_Achr2P10020_001	Banana	cytosol	22.51	35.45
GSMUA_Achr5P15290_001	Banana	nucleus	21.33	35.43
GSMUA_AchrUn_...	Banana	cytosol	29.38	34.44
GSMUA_Achr9P29950_001	Banana	cytosol	30.33	34.13
GSMUA_Achr9P24720_001	Banana	cytosol	28.91	33.8
GSMUA_Achr1P08590_001	Banana	nucleus	33.18	33.57
GSMUA_Achr4P27010_001	Banana	plastid	22.51	33.22
GSMUA_Achr4P30380_001	Banana	cytosol	22.27	33.22
GSMUA_Achr1P01700_001	Banana	nucleus	22.99	32.88
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	27.25	31.0
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	21.33	30.51
PGSC0003DMT400076665	Potato	cytosol	10.66	28.3
GSMUA_Achr6P19060_001	Banana	nucleus	11.61	21.68

Protein Annotations

EnsemblPlants:GSMUA_Achr8P19240_001	EnsemblPlants:GSMUA_Achr8T19240_001	EnsemblPlantsGene:GSMUA_Achr8G19240_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF20	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF56399	UniParc:UPI000294880B	UniProt:M0TRS7	MapMan:15.5.15	:

Description

ZOS4-01 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G19240_001]

Coordinates

chr8:+:24261817..24263735

Molecular Weight (calculated)

45084.2 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.391

Length

422 amino acids

Sequence
(BLAST)

001: MALTSFVQAA TPTSHHQHHH TDDRRERKRR KRKKKPSPPG STRTLAPPSP SSSSSSSWEQ FKSLLSCRST AASQVHDPSS TAARLGRAAC GSSICALRDV
101: LHGNTRTPPL AQAARSARHH PPVSSVGCGG YSRGGMQLPK LSGCYECRAV SIEPSSRRYP RPRTTLCACS ECGEVFTKPD SLELHRVLRH AVSELEPEDS
201: GRNIVEIIFK SSWQNKDRPI CQIERILKVH NAPRTVARFE DYRAAVKSRA LPHLSSTAGG DRHHHPSRCA ADGNELLRFH CASLSCSLGA RGSTSLCSNC
301: SSISSSASSS PGGAAACGVC TIIRHGFAPA HGVRTTASSS LAHDRCPAAS VEDSGGEQRA MLVCRVIAGR VRLPADDPVA ADAYDSVAVG DGGESYGNLE
401: ELLVANPRAI LPCFVVIYRA LS

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.